Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0058
(781 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL132895-1|CAC14399.1| 601|Caenorhabditis elegans Hypothetical ... 105 5e-23
Z68000-4|CAA91972.4| 1342|Caenorhabditis elegans Hypothetical pr... 34 0.099
Z50739-4|CAA90605.4| 1342|Caenorhabditis elegans Hypothetical pr... 34 0.099
U53153-7|AAC69037.1| 1280|Caenorhabditis elegans Hypothetical pr... 29 4.9
AL132860-3|CAB60514.2| 342|Caenorhabditis elegans Hypothetical ... 29 4.9
AL032660-2|CAA21751.1| 690|Caenorhabditis elegans Hypothetical ... 28 6.5
Z68227-6|CAA92512.1| 410|Caenorhabditis elegans Hypothetical pr... 28 8.6
Z30423-2|CAA83004.1| 468|Caenorhabditis elegans Hypothetical pr... 28 8.6
L16621-6|AAA28229.1| 67|Caenorhabditis elegans Hypothetical pr... 28 8.6
AL110478-11|CAB54347.2| 1435|Caenorhabditis elegans Hypothetical... 28 8.6
AF106587-1|AAC78226.1| 849|Caenorhabditis elegans Msh (muts hom... 28 8.6
>AL132895-1|CAC14399.1| 601|Caenorhabditis elegans Hypothetical
protein Y59A8A.1 protein.
Length = 601
Score = 105 bits (251), Expect = 5e-23
Identities = 65/209 (31%), Positives = 102/209 (48%), Gaps = 6/209 (2%)
Frame = +2
Query: 119 KKA*NPPIMFEM--NTAEPMQVDIPPEDNENNETECY--VVENPTLDLETYAASYTGFAK 286
K A NP +M + N A PM + +D + + Y V +D+E+ A SY A
Sbjct: 39 KPAGNPDLMQQSLDNPAIPMHLIEKRDDRRESCDDGYSLTVNESAIDIESLACSYDSNAF 98
Query: 287 LYRLMFVADHCPSLRLEALKMAISYVMT-TYNVNLYHTLHKKLSEAVASAGLPDIAGSQD 463
R F+A HCP LR +A I+Y+ T ++ Y +L +A + +
Sbjct: 99 FLRARFIARHCPILRADAYISLINYLKEHTTDITHYVAFFNELESELARKEFKNRQLNFQ 158
Query: 464 IPVLDTIWVESKTKKAAIKLEKLDTDLKNYKTNSIKESIRRGHDDLGDHYLDCGDLTSAL 643
IP+ D W+E ++L + K +K +KES RR +DL HY+ G + A+
Sbjct: 159 IPLRDQKWIEENGATWQSTTDQLQAEYKRHKDEGVKESTRRAMEDLFQHYMMAGKIDEAI 218
Query: 644 KCYSRA-RDYCTSGKHLVMMCLNVVKVSV 727
+ YSR RDYCT KH + M +N ++V++
Sbjct: 219 RLYSRGIRDYCTQLKHSINMWINWMEVAI 247
>Z68000-4|CAA91972.4| 1342|Caenorhabditis elegans Hypothetical protein
F13D2.1 protein.
Length = 1342
Score = 34.3 bits (75), Expect = 0.099
Identities = 23/93 (24%), Positives = 44/93 (47%), Gaps = 2/93 (2%)
Frame = +2
Query: 170 MQVDIPPEDNENNETECYVVENPTL-DLETYAASYTGF-AKLYRLMFVADHCPSLRLEAL 343
+ +D +DN ++T C+ V NPT+ L+ + +YT F A +L F+ D + +
Sbjct: 1040 LSIDQKVQDNFVHQTVCFNVSNPTIKTLDIFHGTYTLFTATPDQLYFLNDSYTPINPSSS 1099
Query: 344 KMAISYVMTTYNVNLYHTLHKKLSEAVASAGLP 442
+ + +++T N LSE+ +P
Sbjct: 1100 ALGLHFIITNIVSNQTLCYKVALSESRGGKNIP 1132
>Z50739-4|CAA90605.4| 1342|Caenorhabditis elegans Hypothetical protein
F13D2.1 protein.
Length = 1342
Score = 34.3 bits (75), Expect = 0.099
Identities = 23/93 (24%), Positives = 44/93 (47%), Gaps = 2/93 (2%)
Frame = +2
Query: 170 MQVDIPPEDNENNETECYVVENPTL-DLETYAASYTGF-AKLYRLMFVADHCPSLRLEAL 343
+ +D +DN ++T C+ V NPT+ L+ + +YT F A +L F+ D + +
Sbjct: 1040 LSIDQKVQDNFVHQTVCFNVSNPTIKTLDIFHGTYTLFTATPDQLYFLNDSYTPINPSSS 1099
Query: 344 KMAISYVMTTYNVNLYHTLHKKLSEAVASAGLP 442
+ + +++T N LSE+ +P
Sbjct: 1100 ALGLHFIITNIVSNQTLCYKVALSESRGGKNIP 1132
>U53153-7|AAC69037.1| 1280|Caenorhabditis elegans Hypothetical protein
T19A5.1 protein.
Length = 1280
Score = 28.7 bits (61), Expect = 4.9
Identities = 15/33 (45%), Positives = 19/33 (57%)
Frame = -3
Query: 191 LGEYQPALVQLCSFRTLLEGFRPFLMKIREIYC 93
+G+YQ AL S +L F+P KIR IYC
Sbjct: 1240 IGDYQRALNFYYSTLSLQANFQPAKDKIRTIYC 1272
>AL132860-3|CAB60514.2| 342|Caenorhabditis elegans Hypothetical
protein Y56A3A.4 protein.
Length = 342
Score = 28.7 bits (61), Expect = 4.9
Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Frame = +2
Query: 131 NPPIMFEMNTAEPMQVDIPPEDNEN-NETE 217
NP I ++T PMQ IPP+ ++N NE +
Sbjct: 21 NPQIAAALSTNSPMQQGIPPQGHQNPNEQQ 50
>AL032660-2|CAA21751.1| 690|Caenorhabditis elegans Hypothetical
protein Y70G10A.3 protein.
Length = 690
Score = 28.3 bits (60), Expect = 6.5
Identities = 18/43 (41%), Positives = 22/43 (51%)
Frame = -2
Query: 198 LSSGGISTCIGSAVFISNIIGGF*AFFNENTRNLLSTMKTNSS 70
LS+ CI +F S II GF AF + LLST T +S
Sbjct: 329 LSNPTFLVCIFVGIFESIIINGFAAFMPKILETLLSTNPTLAS 371
>Z68227-6|CAA92512.1| 410|Caenorhabditis elegans Hypothetical
protein F49C12.8 protein.
Length = 410
Score = 27.9 bits (59), Expect = 8.6
Identities = 12/71 (16%), Positives = 37/71 (52%)
Frame = +2
Query: 518 KLEKLDTDLKNYKTNSIKESIRRGHDDLGDHYLDCGDLTSALKCYSRARDYCTSGKHLVM 697
K++++ ++++ + N + +R+G ++Y GD +ALK Y+ + + +
Sbjct: 94 KIDEITAEVEDAEKNLGESEVRQGLLRKFEYYCQIGDKDNALKAYTATYEKTVGMGYRID 153
Query: 698 MCLNVVKVSVY 730
+ +++V ++
Sbjct: 154 VVFAMIRVGLF 164
>Z30423-2|CAA83004.1| 468|Caenorhabditis elegans Hypothetical
protein T20G5.2 protein.
Length = 468
Score = 27.9 bits (59), Expect = 8.6
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +3
Query: 165 NQCRLIFPQKIMKTMRRNATSLKTPPWIWKH 257
NQ L+F KI+ + N T + W+WKH
Sbjct: 307 NQEVLVFLNKIVGEIGFNYTEEQLKEWVWKH 337
>L16621-6|AAA28229.1| 67|Caenorhabditis elegans Hypothetical
protein ZK688.4 protein.
Length = 67
Score = 27.9 bits (59), Expect = 8.6
Identities = 21/60 (35%), Positives = 27/60 (45%)
Frame = -2
Query: 225 T*HSVSLFSLSSGGISTCIGSAVFISNIIGGF*AFFNENTRNLLSTMKTNSSENRNFTTL 46
T HSVS F + S I + SAV ++ FF E R ST N+N TT+
Sbjct: 9 TVHSVSNFYIFSSTI--LLTSAVILAIFFFFGDGFFREKYRREFSTNSKEKDGNKNLTTV 66
>AL110478-11|CAB54347.2| 1435|Caenorhabditis elegans Hypothetical
protein Y26D4A.9 protein.
Length = 1435
Score = 27.9 bits (59), Expect = 8.6
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = +2
Query: 497 KTKKAAIKLEKLDTDLKNYKTNSIKESIRRGHDDLGDHYLDC 622
K K+A +K+EK Y +KE++ LG +Y DC
Sbjct: 603 KVKEAIVKVEKAIGLSYKYYLEKVKEAVEEVKKVLGVNYEDC 644
>AF106587-1|AAC78226.1| 849|Caenorhabditis elegans Msh (muts
homolog) family protein 2 protein.
Length = 849
Score = 27.9 bits (59), Expect = 8.6
Identities = 20/84 (23%), Positives = 38/84 (45%), Gaps = 3/84 (3%)
Frame = +2
Query: 164 EPMQVDIPPEDNENNET--ECY-VVENPTLDLETYAASYTGFAKLYRLMFVADHCPSLRL 334
E + +D E + NE EC ++ + D + + Y+ F + D C L
Sbjct: 222 ESVHLDYKDEAEKQNENIKECLQILHSNAADEYSISEKYSIFNYGTHGNMLIDSCAVEAL 281
Query: 335 EALKMAISYVMTTYNVNLYHTLHK 406
E ++ +Y+ + N+ LY+ L+K
Sbjct: 282 ELFQLNYNYLEKSNNLTLYNVLNK 305
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,952,538
Number of Sequences: 27780
Number of extensions: 350326
Number of successful extensions: 995
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 950
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 993
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1882685842
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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