Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0058
(781 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g61140.1 68416.m06842 COP9 signalosome complex subunit 1 / CS... 126 2e-29
At4g12770.1 68417.m02004 auxilin-related low similarity to SP|Q2... 30 2.0
At3g51770.1 68416.m05677 tetratricopeptide repeat (TPR)-containi... 30 2.0
At4g12120.1 68417.m01924 cytokinesis-related Sec1 protein, putat... 29 3.5
At3g15390.1 68416.m01951 expressed protein low similarity to PRL... 29 3.5
At4g21820.1 68417.m03156 calmodulin-binding family protein conta... 28 6.0
At5g64230.1 68418.m08068 expressed protein 28 8.0
At5g43500.2 68418.m05318 expressed protein 28 8.0
At5g43500.1 68418.m05319 expressed protein 28 8.0
At2g15820.1 68415.m01814 pentatricopeptide (PPR) repeat-containi... 28 8.0
>At3g61140.1 68416.m06842 COP9 signalosome complex subunit 1 / CSN
complex subunit 1 (CSN1) / COP11 protein (COP11) / FUSCA
protein (FUS6) FUSCA6, COP11, CSN1; identical to FUS6
GI:432446, SP:P45432 from [Arabidopsis thaliana];
contains Pfam profile PF01399: PCI domain; identical to
cDNA CSN complex subunit 1 (CSN1) GI:18056652
Length = 441
Score = 126 bits (304), Expect = 2e-29
Identities = 65/171 (38%), Positives = 97/171 (56%), Gaps = 3/171 (1%)
Frame = +2
Query: 224 VVENPTLDLETYAASYTGFAKLYRLMFVADHCP---SLRLEALKMAISYVMTTYNVNLYH 394
++ LD+E YAA Y G K+ RL+F+A+HC +L+ +AL+MA + N L+
Sbjct: 28 IISGEPLDIEAYAALYKGRTKIMRLLFIANHCGGNHALQFDALRMAYDEIKKGENTQLFR 87
Query: 395 TLHKKLSEAVASAGLPDIAGSQDIPVLDTIWVESKTKKAAIKLEKLDTDLKNYKTNSIKE 574
+ K+ + D+A W E+ ++A K KL+ +L +Y+TN IKE
Sbjct: 88 EVVNKIGNRLGEKYGMDLA-----------WCEAVDRRAEQKKVKLENELSSYRTNLIKE 136
Query: 575 SIRRGHDDLGDHYLDCGDLTSALKCYSRARDYCTSGKHLVMMCLNVVKVSV 727
SIR G++D GD Y CG L A K Y R RDYCT+ KH++ MC+N + VS+
Sbjct: 137 SIRMGYNDFGDFYYACGMLGDAFKNYIRTRDYCTTTKHIIHMCMNAILVSI 187
>At4g12770.1 68417.m02004 auxilin-related low similarity to
SP|Q27974 Auxilin {Bos taurus}
Length = 909
Score = 29.9 bits (64), Expect = 2.0
Identities = 17/62 (27%), Positives = 28/62 (45%)
Frame = +2
Query: 425 ASAGLPDIAGSQDIPVLDTIWVESKTKKAAIKLEKLDTDLKNYKTNSIKESIRRGHDDLG 604
A+ G PD + +D V T + K A ++K + ++ K KES++ G
Sbjct: 432 AANGYPDPSSGEDSDVFSTAAASAAAMKDA--MDKAEAKFRHAKERREKESLKASRSREG 489
Query: 605 DH 610
DH
Sbjct: 490 DH 491
>At3g51770.1 68416.m05677 tetratricopeptide repeat (TPR)-containing
protein contains Pfam profile PF00515: TPR Domain
Length = 958
Score = 29.9 bits (64), Expect = 2.0
Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 9/62 (14%)
Frame = +2
Query: 503 KKAAIKLEKLDTDLKNYKTNSIKESI-------RRGH--DDLGDHYLDCGDLTSALKCYS 655
K A+ LD D NY ++E++ R+G ++LG Y+DC L A CY+
Sbjct: 744 KAYALADSTLDPDSSNYVIQLLQEALKCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYT 803
Query: 656 RA 661
A
Sbjct: 804 NA 805
>At4g12120.1 68417.m01924 cytokinesis-related Sec1 protein, putative
similar to cytokinesis-related Sec1 protein KEULE
[Arabidopsis thaliana] gi|12659318|gb|AAK01291; contains
Pfam domain, PF00995: Sec1 family
Length = 662
Score = 29.1 bits (62), Expect = 3.5
Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 1/65 (1%)
Frame = +2
Query: 476 DTIWVESKTKKAAIKLEKLDTDLKNYKTNSIKESIRRGHDDLGD-HYLDCGDLTSALKCY 652
D+IWVE + A E+L + N+ + + ++ D GD D + AL Y
Sbjct: 312 DSIWVELRDAHIADASERLHEKMTNFVSKNKAAQLKHSSKDFGDLSSKDLQKMVHALPQY 371
Query: 653 SRARD 667
S D
Sbjct: 372 SEQID 376
>At3g15390.1 68416.m01951 expressed protein low similarity to
PRLI-interacting factor N [Arabidopsis thaliana]
GI:11139276
Length = 468
Score = 29.1 bits (62), Expect = 3.5
Identities = 25/97 (25%), Positives = 38/97 (39%), Gaps = 4/97 (4%)
Frame = +2
Query: 404 KKLSEAVASAGLPDIAGSQDIPVLDTIWVESKTKKAAIKLEKLDTDLKNYKTNSIKESIR 583
+ +S A A P S+DIP + IW E K K+ + TD++ + + E +
Sbjct: 117 RPISNAPKEATKPLKINSRDIPETE-IWSEEMRKSNEGKISRAPTDVEEFIVKMLGEGFQ 175
Query: 584 RG----HDDLGDHYLDCGDLTSALKCYSRARDYCTSG 682
H LG D T L +S + Y G
Sbjct: 176 ASQEVIHQVLGVCGYDVKKSTEKLLDFSDTKKYADVG 212
>At4g21820.1 68417.m03156 calmodulin-binding family protein contains
IQ calmodulin-binding motif, Pfam:PF00612
Length = 1088
Score = 28.3 bits (60), Expect = 6.0
Identities = 20/62 (32%), Positives = 26/62 (41%)
Frame = +2
Query: 500 TKKAAIKLEKLDTDLKNYKTNSIKESIRRGHDDLGDHYLDCGDLTSALKCYSRARDYCTS 679
+ K +K LD L Y TNS+ + L H L C K YSR R C+S
Sbjct: 571 SSKLIVKENLLDFTLAGYLTNSVFSQ-----EQLNFHKLLCSSCQVQEKRYSRIRISCSS 625
Query: 680 GK 685
+
Sbjct: 626 SE 627
>At5g64230.1 68418.m08068 expressed protein
Length = 379
Score = 27.9 bits (59), Expect = 8.0
Identities = 26/122 (21%), Positives = 53/122 (43%), Gaps = 3/122 (2%)
Frame = +2
Query: 233 NPTLDLETYAASYTGFAKLYRLMFVADHCPSLRLEALKMAISYVMTTYNVNLYHTLHKKL 412
NP + ++A Y+ K + V +HC + AI +++ N + ++
Sbjct: 65 NPNSSVVSFANPYSSKTKKKNKILVINHCEE---SGIGRAIWQLLSAMNEIPVSSRKYQV 121
Query: 413 SEAVASAGLPDIAGSQDIPVLDTIWVESKTKKAAIK--LEKLDTDL-KNYKTNSIKESIR 583
++A + D G + +LD + + A+ + L +L+T + +N I E +R
Sbjct: 122 VRSLAERLINDNQGENSVALLD---LNRRVLNASFRTTLSRLETAVERNPNRRDIDEPVR 178
Query: 584 RG 589
RG
Sbjct: 179 RG 180
>At5g43500.2 68418.m05318 expressed protein
Length = 584
Score = 27.9 bits (59), Expect = 8.0
Identities = 23/79 (29%), Positives = 35/79 (44%), Gaps = 3/79 (3%)
Frame = +2
Query: 416 EAVASAGLPDIAGSQDIPVLDTIWVESKTKKAAIKLEKLDTDLKNYKTNSIKESIRRGHD 595
+A AS +PD+ S+D ESK K + + + + + IRRGH
Sbjct: 148 DASASEAVPDVTDSKDTS-------ESKRKYRKMIFGEEALKISPKEPYCLYHPIRRGHF 200
Query: 596 DLGDHYLD---CGDLTSAL 643
++ HY C DLT+ L
Sbjct: 201 NVSPHYSAQRVCEDLTAIL 219
>At5g43500.1 68418.m05319 expressed protein
Length = 596
Score = 27.9 bits (59), Expect = 8.0
Identities = 23/79 (29%), Positives = 35/79 (44%), Gaps = 3/79 (3%)
Frame = +2
Query: 416 EAVASAGLPDIAGSQDIPVLDTIWVESKTKKAAIKLEKLDTDLKNYKTNSIKESIRRGHD 595
+A AS +PD+ S+D ESK K + + + + + IRRGH
Sbjct: 160 DASASEAVPDVTDSKDTS-------ESKRKYRKMIFGEEALKISPKEPYCLYHPIRRGHF 212
Query: 596 DLGDHYLD---CGDLTSAL 643
++ HY C DLT+ L
Sbjct: 213 NVSPHYSAQRVCEDLTAIL 231
>At2g15820.1 68415.m01814 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profiles PF01535: PPR repeat,
PF03161 LAGLIDADG DNA endonuclease family
Length = 547
Score = 27.9 bits (59), Expect = 8.0
Identities = 28/89 (31%), Positives = 36/89 (40%)
Frame = +2
Query: 398 LHKKLSEAVASAGLPDIAGSQDIPVLDTIWVESKTKKAAIKLEKLDTDLKNYKTNSIKES 577
LH+KL A L SQ P+ + I+++S TK LEK K N
Sbjct: 209 LHEKLEMAFVQC-LEKCQPSQ--PIYN-IYLDSLTKIG--NLEKAGDVFNEMKNNGTINV 262
Query: 578 IRRGHDDLGDHYLDCGDLTSALKCYSRAR 664
R + L YLDCG A + Y R
Sbjct: 263 SARSCNSLLKGYLDCGKQVQAERIYDLMR 291
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,844,981
Number of Sequences: 28952
Number of extensions: 321300
Number of successful extensions: 866
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 849
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 865
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1746037600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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