Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0057
         (713 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18.06c |caf1|pop2|CCR4-Not complex subunit Caf1|Schizosaccha...   117   1e-27
SPBC29A10.09c |||CAF1 family ribonuclease|Schizosaccharomyces po...    39   8e-04
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        31   0.16 
SPBC3B8.01c |arh1||NADPH-adrenodoxin reductase Arh1 |Schizosacch...    28   1.2  
SPAP27G11.15 |slx1||structure-specific endonuclease catalytic su...    26   4.7  
SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase Swr1|Schizo...    26   4.7  
SPCC584.15c |||arrestin/PY protein 2|Schizosaccharomyces pombe|c...    26   4.7  
SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces p...    26   6.1  
SPAC1565.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   6.1  
SPAC11D3.03c |||meiotic chromosome segregation protein|Schizosac...    26   6.1  
SPCC576.15c |ksg1||serine/threonine protein kinase Ksg1|Schizosa...    26   6.1  
SPAC823.11 |||sphingosine-1-phosphate phosphatase |Schizosacchar...    25   8.1  

>SPCC18.06c |caf1|pop2|CCR4-Not complex subunit
           Caf1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 332

 Score =  117 bits (282), Expect = 1e-27
 Identities = 51/90 (56%), Positives = 65/90 (72%)
 Frame = +2

Query: 347 IKDVWNHNLHEEFQIIRQVVQKYHWVAMDTEFPGVVARPIGEFRSTADYQYQLLRCNVDL 526
           I+DVW+ NL +E  +I  ++++Y  V+MDTEFPGVVARP+G F+S+ DY YQ LR NVD 
Sbjct: 22  IRDVWSTNLQQEMNLIMSLIERYPVVSMDTEFPGVVARPLGVFKSSDDYHYQTLRANVDS 81

Query: 527 LRIIQLGLTFMDENGKTPPGYTTWQFNFKF 616
           L+IIQ+GL   DE G  P    TWQFNF F
Sbjct: 82  LKIIQIGLALSDEEGNAPVEACTWQFNFTF 111



 Score = 53.2 bits (122), Expect = 4e-08
 Identities = 22/33 (66%), Positives = 28/33 (84%)
 Frame = +3

Query: 615 FNLQEDMYAQDSIDLLQNSGLQFRKHEEDGIEP 713
           FNLQ+DMYA +SI+LL  SG+ F+KH+E GIEP
Sbjct: 111 FNLQDDMYAPESIELLTKSGIDFKKHQEVGIEP 143


>SPBC29A10.09c |||CAF1 family ribonuclease|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 427

 Score = 38.7 bits (86), Expect = 8e-04
 Identities = 22/77 (28%), Positives = 42/77 (54%), Gaps = 2/77 (2%)
 Frame = +2

Query: 353 DVWNHNLHEEFQIIRQVVQKYHWVAMDTEFPGVVARPIGEFRSTADYQYQLLRCNVDLLR 532
           ++   N  E  + + + V   H+V++D EF G++       ++T   +Y+LLR +     
Sbjct: 2   EIHGKNFLETLKELEKHVDSAHYVSIDCEFSGLLRDFNLNNKNTLQDRYELLRKSSIRYT 61

Query: 533 IIQLGLTF--MDENGKT 577
           I+Q+G+TF  +  NGK+
Sbjct: 62  ILQIGITFIYLQNNGKS 78


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 31.1 bits (67), Expect = 0.16
 Identities = 19/67 (28%), Positives = 32/67 (47%)
 Frame = -3

Query: 432 SIATQ*YFWTTCLIIWNSSCKL*FQTSFIPQSLPPGSDMEPKLADGILYRLSVSKREELS 253
           S + + + W TCL IW  +CKL        Q LP     + +L++ +  R   +K E+  
Sbjct: 550 STSARRFRWKTCLKIWKEACKLSKTVLDGQQPLPNPQKRQKRLSNQVELRNQWAKFEKEV 609

Query: 252 VFFDAVV 232
             F+ V+
Sbjct: 610 EDFEKVL 616


>SPBC3B8.01c |arh1||NADPH-adrenodoxin reductase Arh1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 469

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 32/126 (25%), Positives = 56/126 (44%), Gaps = 3/126 (2%)
 Frame = +2

Query: 212 NTQN-KSKTTASKKTDNSSRLET-DKRYKMPSASFGSISLPGGSDCGIK-DVWNHNLHEE 382
           N +N + + T S +TD  S+  T   +  + S  + S+ LPG  D G+  D     +   
Sbjct: 303 NVENVRFQITDSIRTDAESKFTTIPAQLFIRSIGYKSMPLPGMKDVGVPFDDAKGIVKNV 362

Query: 383 FQIIRQVVQKYHWVAMDTEFPGVVARPIGEFRSTADYQYQLLRCNVDLLRIIQLGLTFMD 562
              +R  +    WV       GV+A  + +  +TAD   +  +   + L+  +LG   + 
Sbjct: 363 NGFVRPGIYTSGWVKHGPI--GVIATTMMDAFATADTITKDWKSKKEFLKNSKLGWDGLK 420

Query: 563 ENGKTP 580
           +N KTP
Sbjct: 421 KNIKTP 426


>SPAP27G11.15 |slx1||structure-specific endonuclease catalytic
           subunit |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 271

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -1

Query: 293 SCIVYPFPNEKNYLFFSTPW 234
           SC+VY FPN+ + L F   W
Sbjct: 58  SCLVYGFPNKVSALKFEWNW 77


>SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase
           Swr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1288

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -2

Query: 481 RSKFSNWSCNYSWKFCIHSYPMILLDY 401
           + K S W    +W  CI SY ++L D+
Sbjct: 535 KEKRSGWYKPDTWHVCITSYQLVLQDH 561


>SPCC584.15c |||arrestin/PY protein 2|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 594

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -2

Query: 670 EFCNRSIESCAYISSCRLKFK 608
           E+C   I S AY S+CR +FK
Sbjct: 228 EYCTLFITSKAYSSTCRKEFK 248


>SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1040

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 10/34 (29%), Positives = 21/34 (61%)
 Frame = +1

Query: 61  KISEKKPIILSCDSIFPRNVFKLIPQQYSMFIDN 162
           + S   PI+ + + +   N+ +L+P+QYS  ++N
Sbjct: 814 RYSGMAPIVDADNKLRTENISELLPKQYSNILEN 847


>SPAC1565.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 773

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 10/33 (30%), Positives = 20/33 (60%)
 Frame = +2

Query: 362 NHNLHEEFQIIRQVVQKYHWVAMDTEFPGVVAR 460
           +H+L +E   +R + ++ + +  D +F GVV R
Sbjct: 450 DHSLRDELISLRSLAEQKNTIEFDAKFLGVVER 482


>SPAC11D3.03c |||meiotic chromosome segregation
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 302

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
 Frame = +2

Query: 290 KMPSASFGSISLPGGSDCGIKDVWN-HNLHEEFQIIR 397
           K+P  S  SI +P G      ++WN HN  E F   R
Sbjct: 68  KIPQKSIFSIVVPEGPQVCDLNIWNFHNPRERFWAAR 104


>SPCC576.15c |ksg1||serine/threonine protein kinase
           Ksg1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 592

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 13/42 (30%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = +2

Query: 206 VQNTQNKSKTTASKKTDNSSRLETDKRYKMPSA-SFGSISLP 328
           ++NT N ++T AS+  +N ++ E+D  +   S+      SLP
Sbjct: 1   MRNTHNPNETEASEDAENDTQSESDLSFDHGSSEKLNRASLP 42


>SPAC823.11 |||sphingosine-1-phosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 411

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -1

Query: 251 FFSTPWFSIYFVY 213
           FF  PW  +YF+Y
Sbjct: 59  FFRNPWLDVYFMY 71


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,169,642
Number of Sequences: 5004
Number of extensions: 69201
Number of successful extensions: 197
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 188
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 197
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)