Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0057
(713 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_1070 + 33872845-33873726 113 2e-25
09_04_0126 + 14874739-14875581 109 2e-24
08_02_0807 + 21411799-21412665 99 2e-21
07_01_0499 - 3738959-3740068 79 5e-15
04_04_1644 + 35015849-35016838 75 6e-14
06_01_0276 + 2035763-2036770 64 1e-10
10_01_0149 + 1745355-1746230 60 1e-09
10_01_0124 - 1504521-1505303 51 8e-07
06_03_0342 + 19737951-19738772 48 7e-06
10_08_0041 - 14374684-14377339,14377371-14378233 44 2e-04
10_08_0038 - 14336633-14336864,14336970-14337187,14337302-14339020 41 8e-04
10_08_0040 + 14360543-14361778,14361787-14362782,14362791-14363657 40 0.001
10_08_0032 - 14288522-14290465 38 0.006
06_03_0183 + 17642639-17643428,17644507-17644949 37 0.018
10_08_0527 - 18555231-18555882,18556334-18556463,18557073-18557175 29 2.8
05_06_0118 + 25735966-25737601,25737698-25738488 29 2.8
08_02_0757 + 20840885-20841281,20842937-20843025,20843132-208432... 28 6.4
08_01_0451 + 3979323-3979566,3979649-3980012,3980112-3980330,398... 28 6.4
04_04_0409 + 24992944-24993421,24993920-24994000,24994400-249946... 28 6.4
06_01_0386 - 2767806-2767955,2768150-2768239,2768317-2768373,276... 28 8.5
>02_05_1070 + 33872845-33873726
Length = 293
Score = 113 bits (271), Expect = 2e-25
Identities = 53/94 (56%), Positives = 66/94 (70%), Gaps = 5/94 (5%)
Frame = +2
Query: 347 IKDVWNHNLHEEFQIIRQVVQKYHWVAMDTEFPGVVARPIGEFRSTADYQYQLLRCNVDL 526
I++VW NL EEF +IR VV ++ +VAMDTEFPG+V RP+G FRS ADY Y L+ NVD+
Sbjct: 30 IREVWADNLEEEFALIRDVVDEFPFVAMDTEFPGIVCRPVGAFRSPADYNYATLKANVDM 89
Query: 527 LRIIQLGLTFMDENGKTP---PG--YTTWQFNFK 613
L +IQLGLTF G+ P PG WQFNF+
Sbjct: 90 LHLIQLGLTFSSPRGELPALGPGRRRCVWQFNFR 123
Score = 36.7 bits (81), Expect = 0.018
Identities = 14/32 (43%), Positives = 24/32 (75%)
Frame = +3
Query: 615 FNLQEDMYAQDSIDLLQNSGLQFRKHEEDGIE 710
F+ D++A DSI+LL+ SG+ FR++ E G++
Sbjct: 125 FDDARDIFASDSIELLRRSGIDFRRNSERGVD 156
>09_04_0126 + 14874739-14875581
Length = 280
Score = 109 bits (263), Expect = 2e-24
Identities = 52/104 (50%), Positives = 69/104 (66%), Gaps = 5/104 (4%)
Frame = +2
Query: 347 IKDVWNHNLHEEFQIIRQVVQKYHWVAMDTEFPGVVARPIGEFRSTADYQYQLLRCNVDL 526
I++VW NL EF +IR++V + +VAMDTEFPGVV RP+G F+S AD+ Y L+ NVD+
Sbjct: 14 IREVWEDNLEAEFAVIREIVDDFPYVAMDTEFPGVVCRPLGTFKSNADFNYATLKANVDM 73
Query: 527 LRIIQLGLTFMDENGKTPP-----GYTTWQFNFKFQSTRRYVCA 643
L++IQLGLTF +E+G P WQFNF+ R V A
Sbjct: 74 LKLIQLGLTFSNEHGGLPSLGPEGRPCVWQFNFRGFDPRTDVAA 117
Score = 36.3 bits (80), Expect = 0.024
Identities = 15/32 (46%), Positives = 22/32 (68%)
Frame = +3
Query: 615 FNLQEDMYAQDSIDLLQNSGLQFRKHEEDGIE 710
F+ + D+ A DSIDLL+ SG+ F +H DG +
Sbjct: 109 FDPRTDVAAADSIDLLRRSGIDFTRHSADGAD 140
>08_02_0807 + 21411799-21412665
Length = 288
Score = 99 bits (238), Expect = 2e-21
Identities = 47/94 (50%), Positives = 61/94 (64%), Gaps = 5/94 (5%)
Frame = +2
Query: 347 IKDVWNHNLHEEFQIIRQVVQKYHWVAMDTEFPGVVARPIGEFRSTADYQYQLLRCNVDL 526
I++VW NL E IR V +Y +VAMDTEFPG+V RP+G FR+T ++ Y L NV++
Sbjct: 18 IREVWAGNLEAEIAAIRDEVDRYPYVAMDTEFPGIVCRPVGNFRTTDEFNYANLEANVNM 77
Query: 527 LRIIQLGLTFMDENGKTPPGYT-----TWQFNFK 613
L++IQLGLT DE G P T WQFNF+
Sbjct: 78 LKLIQLGLTLSDEGGDLPRRGTGGRRCIWQFNFR 111
>07_01_0499 - 3738959-3740068
Length = 369
Score = 78.6 bits (185), Expect = 5e-15
Identities = 42/106 (39%), Positives = 57/106 (53%), Gaps = 7/106 (6%)
Frame = +2
Query: 347 IKDVWNHNLHEEFQIIRQVVQKYHWVAMDTEFPGVVARPIG-EFRSTADYQYQLLRCNVD 523
++ VW HNL EE +I + + A+DTEFPG V RP + T +Y LL+ NVD
Sbjct: 94 VRSVWAHNLDEEANLIESLFPSFRLAAVDTEFPGTVHRPSAPAYTLTRKQKYALLKKNVD 153
Query: 524 LLRIIQLGLTFMDENGKTPPGYT------TWQFNFKFQSTRRYVCA 643
L ++QLGLT D G+ P T W+FNF+ RR+ A
Sbjct: 154 ELHLVQLGLTLFDAGGRLPDLGTGGAARYVWEFNFREFDLRRHAHA 199
>04_04_1644 + 35015849-35016838
Length = 329
Score = 74.9 bits (176), Expect = 6e-14
Identities = 36/70 (51%), Positives = 48/70 (68%), Gaps = 1/70 (1%)
Frame = +2
Query: 347 IKDVWNHNLHEEFQIIRQVVQKYHWVAMDTEFPGVVARPIGE-FRSTADYQYQLLRCNVD 523
I+ VW HN+ EEF+IIR + + +V+MDTEFPGV+ RP TA +Y LLR NVD
Sbjct: 56 IRRVWAHNVEEEFRIIRNAIDHFPYVSMDTEFPGVIHRPTKHPALLTAGDRYDLLRRNVD 115
Query: 524 LLRIIQLGLT 553
L +IQ+G+T
Sbjct: 116 ALHLIQVGIT 125
>06_01_0276 + 2035763-2036770
Length = 335
Score = 64.1 bits (149), Expect = 1e-10
Identities = 39/98 (39%), Positives = 51/98 (52%), Gaps = 3/98 (3%)
Frame = +2
Query: 347 IKDVWNHNLHEEFQIIRQVVQKYHWVAMDTEFPGV---VARPIGEFRSTADYQYQLLRCN 517
++DVW NL EE + I ++ Y V+MDTEFPG VA P T Y +++ N
Sbjct: 72 VRDVWAANLEEELRSIGALLPTYPVVSMDTEFPGTVHDVATP--RHLRTPRESYAVVKRN 129
Query: 518 VDLLRIIQLGLTFMDENGKTPPGYTTWQFNFKFQSTRR 631
VD L ++QLGL G+ P WQFNF RR
Sbjct: 130 VDELHLLQLGLALSGPAGRCP---VAWQFNFAGFDARR 164
>10_01_0149 + 1745355-1746230
Length = 291
Score = 60.5 bits (140), Expect = 1e-09
Identities = 33/84 (39%), Positives = 49/84 (58%), Gaps = 1/84 (1%)
Frame = +2
Query: 368 NLHEEFQIIRQVVQKYHWVAMDTEFPGVV-ARPIGEFRSTADYQYQLLRCNVDLLRIIQL 544
NLH E +IR ++ + +VA+DT+FPGVV P G TAD +Y +R N D L ++QL
Sbjct: 40 NLHREMSLIRSLMPTFPFVAVDTQFPGVVHPHPRGA-GVTADDRYAAVRANADELCLLQL 98
Query: 545 GLTFMDENGKTPPGYTTWQFNFKF 616
G+T +G+ P +F + F
Sbjct: 99 GITLSAADGRLPVDGALVEFMWDF 122
>10_01_0124 - 1504521-1505303
Length = 260
Score = 51.2 bits (117), Expect = 8e-07
Identities = 27/72 (37%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Frame = +2
Query: 368 NLHEEFQIIRQVVQKYHWVAMDTEFPGVVARP-IGEFRSTADYQYQLLRCNVDLLRIIQL 544
NL E +I +++ +Y +V +D EF GVV P R T D Y L+ NVD + +Q+
Sbjct: 5 NLDSEMGLIGEMMVQYPYVTIDVEFAGVVHHPPYTGSRPTPDEIYAALKSNVDEVPAVQI 64
Query: 545 GLTFMDENGKTP 580
G+T D G P
Sbjct: 65 GITLSDAEGNLP 76
>06_03_0342 + 19737951-19738772
Length = 273
Score = 48.0 bits (109), Expect = 7e-06
Identities = 31/94 (32%), Positives = 48/94 (51%), Gaps = 7/94 (7%)
Frame = +2
Query: 347 IKDVWNHNLHEEFQIIRQVVQKYHWVAMDTEFPGVV---ARPIGEFRS----TADYQYQL 505
++ VW N E I+R V + A++ ++PG V A G+ R TA+ +YQ+
Sbjct: 5 VRSVWADNFAAESAILRAVAPCAVYAAINVQYPGCVVSAAGGAGDHRCYYDLTAEERYQV 64
Query: 506 LRCNVDLLRIIQLGLTFMDENGKTPPGYTTWQFN 607
+R N D L+ +QLGL +G G W+FN
Sbjct: 65 VRANADELKPLQLGLAVRTADG----GRFAWEFN 94
>10_08_0041 - 14374684-14377339,14377371-14378233
Length = 1172
Score = 43.6 bits (98), Expect = 2e-04
Identities = 27/95 (28%), Positives = 47/95 (49%), Gaps = 5/95 (5%)
Frame = +2
Query: 347 IKDVWNHNLHEEFQIIRQVVQKYH---WVAMDTEFPGVVARPIGEFRSTADYQYQLLRCN 517
++ VW N E+F+++ + + + H ++A+D EF A + T+ YQ +R
Sbjct: 648 VQSVWRENCMEQFKLVLEALHQPHRHLYIAVDMEFAADAATNVSHRPVTSISCYQHMRRY 707
Query: 518 VDLLRIIQLGLT--FMDENGKTPPGYTTWQFNFKF 616
V+ I Q+GLT F+ E + P + NF F
Sbjct: 708 VNGGGIFQMGLTFAFVGEGEQAPSPLIALEINFDF 742
>10_08_0038 - 14336633-14336864,14336970-14337187,14337302-14339020
Length = 722
Score = 41.1 bits (92), Expect = 8e-04
Identities = 28/97 (28%), Positives = 48/97 (49%), Gaps = 7/97 (7%)
Frame = +2
Query: 347 IKDVWNHNLHEEFQIIRQVVQKYH---WVAMDTEFPGVVARPIGEFRSTADYQYQLLRCN 517
++ VW N E+F+++ + + + H ++A+D EF A + T+ YQ +R
Sbjct: 329 VQSVWQENCMEQFKLVLEALHQPHRNLYIAVDMEFTADAATNMSHRPVTSTSCYQHVRRY 388
Query: 518 VDLLRIIQLGLTFM---DENGKTPPG-YTTWQFNFKF 616
V+ I+Q+GLTF D G+ P + NF F
Sbjct: 389 VNGGDIVQMGLTFAFVGDVEGEQAPSPPIALEINFDF 425
>10_08_0040 + 14360543-14361778,14361787-14362782,14362791-14363657
Length = 1032
Score = 40.3 bits (90), Expect = 0.001
Identities = 29/106 (27%), Positives = 50/106 (47%), Gaps = 10/106 (9%)
Frame = +2
Query: 347 IKDVWNHNLHEEFQIIRQVV---QKYHWVAMDTEFPGVVARPIGEFRSTADYQYQLLRCN 517
+K VW N E+F+++ + +++ ++A+D EF I T+ Y LR
Sbjct: 553 VKSVWRENYREQFKLVVDALNQPRRHLYIAVDMEFAADATTNIRRRPVTSTGCYHHLREF 612
Query: 518 VDLLRIIQLGLTFM------DENGKTPPGYTTWQFNFKFQ-STRRY 634
V+ I+Q+GLTF+ + + P T + NFK R+Y
Sbjct: 613 VNRGDIVQMGLTFVFVGDGEQSSSSSSPPPITLEINFKINIKARKY 658
>10_08_0032 - 14288522-14290465
Length = 647
Score = 38.3 bits (85), Expect = 0.006
Identities = 28/106 (26%), Positives = 49/106 (46%), Gaps = 10/106 (9%)
Frame = +2
Query: 347 IKDVWNHNLHEEFQIIRQVV---QKYHWVAMDTEFPGVVARPIGEFRSTADYQYQLLRCN 517
+K VW N E+F+++ + +++ ++A+D EF I T+ Y LR
Sbjct: 158 VKSVWRENYREQFKLVVDALHQPRRHLYIAVDMEFAADATTNIRRRPVTSTGCYHHLREF 217
Query: 518 VDLLRIIQLGLTFM------DENGKTPPGYTTWQFNFKFQ-STRRY 634
V+ I+Q+GL F+ + + P T + NFK R+Y
Sbjct: 218 VNRGDIVQMGLAFVFVGGGEQSSSSSSPPPITLEINFKINIKARKY 263
>06_03_0183 + 17642639-17643428,17644507-17644949
Length = 410
Score = 36.7 bits (81), Expect = 0.018
Identities = 26/97 (26%), Positives = 47/97 (48%), Gaps = 8/97 (8%)
Frame = +2
Query: 347 IKDVWNHNLHEEFQIIRQVVQKYHWVAMDTEFPGVVARPIG-----EFRS-TADYQYQLL 508
I VW+ N E + V + VA+ ++PG G ++ S TA+ +Y ++
Sbjct: 17 IHSVWHDNFDAESAQLLAVAPRAVHVAVSVQYPGCAVAQAGTSGRKKYGSLTAEKRYDMV 76
Query: 509 RCNVDLLRIIQLGLTFM--DENGKTPPGYTTWQFNFK 613
+ N+D L IQ+GL D++G + ++FN +
Sbjct: 77 KANIDELHPIQVGLAIRANDDDGDSGE-LVVFEFNLR 112
Score = 34.3 bits (75), Expect = 0.097
Identities = 18/43 (41%), Positives = 25/43 (58%)
Frame = +2
Query: 443 PGVVARPIGEFRSTADYQYQLLRCNVDLLRIIQLGLTFMDENG 571
PG RP + TA+ +Y +L+ NVD LR IQ+GL +G
Sbjct: 297 PGGEPRPFEQL--TAEQRYGVLKANVDALRAIQVGLAIRTGDG 337
>10_08_0527 - 18555231-18555882,18556334-18556463,18557073-18557175
Length = 294
Score = 29.5 bits (63), Expect = 2.8
Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Frame = +2
Query: 281 KRYKMPSASFGSIS--LPGGSDCGIKDVWNHNLHEEF 385
K Y +S+ +I+ LPG +D +K+ WN L + F
Sbjct: 70 KMYSKKGSSWSAIAAQLPGRTDLAVKNYWNSTLKKRF 106
>05_06_0118 + 25735966-25737601,25737698-25738488
Length = 808
Score = 29.5 bits (63), Expect = 2.8
Identities = 24/69 (34%), Positives = 35/69 (50%), Gaps = 6/69 (8%)
Frame = -3
Query: 411 FWTTCLIIWNSSCKL*FQTSFIPQSLPPGSDMEPKLADGILYRLSVSK----REELSVFF 244
++ TC IIW+ S Q +P P +DM P DG+LY +S + E VFF
Sbjct: 579 YYLTC-IIWSCSS----QGQPLPDPPLPVNDMPPVSLDGVLYWMSEPRLGQSYERAIVFF 633
Query: 243 D--AVVFDL 223
+ A +FD+
Sbjct: 634 NIAAKIFDV 642
>08_02_0757 +
20840885-20841281,20842937-20843025,20843132-20843257,
20843617-20844333,20844420-20844630,20844739-20845238,
20845998-20846023,20846393-20846531,20846579-20846660,
20846990-20847153
Length = 816
Score = 28.3 bits (60), Expect = 6.4
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = +2
Query: 215 TQNKSKTTASKKTDNSSRLETDKRYKMPSASFGSISL 325
T+ S + ++K + ETD + +PSA+FGS SL
Sbjct: 346 TKGASSSDGAQKRKRDAFSETDPQQCVPSAAFGSDSL 382
>08_01_0451 +
3979323-3979566,3979649-3980012,3980112-3980330,
3980713-3980872,3981680-3981817,3982161-3982448
Length = 470
Score = 28.3 bits (60), Expect = 6.4
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = +2
Query: 395 RQVVQKYHWVAMDTEFPGVVARPIGEFRSTADYQYQ 502
+ +V++Y + + TE P +VA I + TADY Y+
Sbjct: 414 KDIVKEY--LTLPTEQPKIVAETIVDLARTADYMYK 447
>04_04_0409 +
24992944-24993421,24993920-24994000,24994400-24994622,
24994709-24994850,24995166-24995555
Length = 437
Score = 28.3 bits (60), Expect = 6.4
Identities = 16/59 (27%), Positives = 28/59 (47%)
Frame = -3
Query: 336 LPPGSDMEPKLADGILYRLSVSKREELSVFFDAVVFDLFCVF*TN*APVLGLLKHPLQV 160
+ PGS L++ L + + R+ L + + FD +C N P+L ++P QV
Sbjct: 281 IAPGSPSSTLLSEQKLRGVIENARQILKIVEEFGTFDKYCWSFVNNKPILSRFRYPRQV 339
>06_01_0386 -
2767806-2767955,2768150-2768239,2768317-2768373,
2768477-2768533,2768610-2769389
Length = 377
Score = 27.9 bits (59), Expect = 8.5
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = -3
Query: 342 QSLPPGSDMEPKLADGILYRLSVSKR 265
+ LPPG+D E LA+ +LY S+ +R
Sbjct: 7 EQLPPGADRERLLAEEVLYLHSLWRR 32
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,967,407
Number of Sequences: 37544
Number of extensions: 393293
Number of successful extensions: 1076
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1042
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1066
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1851002996
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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