Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0057
         (713 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ439353-5|CAD27927.1|  459|Anopheles gambiae putative G-protein...    28   0.33 
AJ535204-1|CAD59404.1| 1187|Anopheles gambiae SMC2 protein protein.    25   3.1  
DQ303468-1|ABC18327.1| 1115|Anopheles gambiae putative methopren...    23   7.2  
AY805323-1|AAV66543.1|  459|Anopheles gambiae beta subunit-GABA-...    23   7.2  
AY353563-1|AAQ57599.1| 1132|Anopheles gambiae relish protein.          23   7.2  
AB090816-2|BAC57908.1| 1201|Anopheles gambiae reverse transcript...    23   9.5  

>AJ439353-5|CAD27927.1|  459|Anopheles gambiae putative G-protein
           coupled receptor protein.
          Length = 459

 Score = 27.9 bits (59), Expect = 0.33
 Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 3/68 (4%)
 Frame = -1

Query: 425 LPNDTFGLP---V*LSGILHANCDSKHLLYHNHCPLEVIWNQNLRTASCIVYPFPNEKNY 255
           L ND  GL    V +   L+ + D      HN C L VIW     ++ C+ +    E+ Y
Sbjct: 100 LTNDLIGLSGMFVQMCLHLYLSPDVVQANIHNLCVLRVIWRVFGISSGCVAFVMALER-Y 158

Query: 254 LFFSTPWF 231
           +  + P+F
Sbjct: 159 IALAKPFF 166


>AJ535204-1|CAD59404.1| 1187|Anopheles gambiae SMC2 protein protein.
          Length = 1187

 Score = 24.6 bits (51), Expect = 3.1
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = +2

Query: 347  IKDVWNHNLHEEFQIIRQVVQKYHWVAMDTEFPGV 451
            I  V N N  + +  I  + QKY W+  D EF GV
Sbjct: 915  ITKVRNEN-KDGYDRISGMEQKYPWIPEDKEFFGV 948


>DQ303468-1|ABC18327.1| 1115|Anopheles gambiae putative
           methoprene-tolerant protein protein.
          Length = 1115

 Score = 23.4 bits (48), Expect = 7.2
 Identities = 14/45 (31%), Positives = 19/45 (42%)
 Frame = -1

Query: 377 HANCDSKHLLYHNHCPLEVIWNQNLRTASCIVYPFPNEKNYLFFS 243
           H      H  +H+H P     +Q   +AS   YP P E  Y  F+
Sbjct: 177 HPGHSQHHHHHHHHHPHH---SQQQHSASPRCYPMPPEHMYNMFN 218


>AY805323-1|AAV66543.1|  459|Anopheles gambiae beta
           subunit-GABA-A-gated chloride channelprotein.
          Length = 459

 Score = 23.4 bits (48), Expect = 7.2
 Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
 Frame = -3

Query: 438 SVSIATQ*YFWTTCLIIWNSSCKL*FQTSFIPQSLPPG---SDMEPKLADGILYRLSVS 271
           +V I +  Y  +  ++ W S+     + + +PQ    G   +D + KLA GI  RLS+S
Sbjct: 157 TVEIESYGYTVSDVVMYWRSTPIRGVEEAELPQFTIIGYETNDRKEKLATGIYQRLSLS 215


>AY353563-1|AAQ57599.1| 1132|Anopheles gambiae relish protein.
          Length = 1132

 Score = 23.4 bits (48), Expect = 7.2
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +2

Query: 353 DVWNHNLHEEFQIIRQVVQKYHWVAMDTEFP 445
           D + H L+E+ Q++     +Y  ++MDT  P
Sbjct: 8   DSYRHELYEQQQLLGTSPIQYTVLSMDTPSP 38


>AB090816-2|BAC57908.1| 1201|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1201

 Score = 23.0 bits (47), Expect = 9.5
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +1

Query: 394 QTGSPKVSLGSYGYRISRSSCTTNWRI 474
           Q  SP++S   YG+R  RS+ +   R+
Sbjct: 592 QQDSPQLSDAQYGFRRGRSTISAIQRV 618


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 779,364
Number of Sequences: 2352
Number of extensions: 16211
Number of successful extensions: 37
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 73177125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)