Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0057
         (713 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U21854-1|AAA87454.1|  310|Caenorhabditis elegans cCAF1 protein p...   107   8e-24
AL132860-28|CAB60501.1|  310|Caenorhabditis elegans Hypothetical...   107   8e-24
Z74474-1|CAA98954.2|  566|Caenorhabditis elegans Hypothetical pr...    33   0.15 
AF047663-6|AAC04447.1|  368|Caenorhabditis elegans Hypothetical ...    30   1.9  
U42439-3|AAA83507.1|  310|Caenorhabditis elegans Hypothetical pr...    29   3.3  
Z81570-7|CAB04608.2| 4063|Caenorhabditis elegans Hypothetical pr...    28   5.8  
Z75956-5|CAB00130.2| 4063|Caenorhabditis elegans Hypothetical pr...    28   5.8  
U41272-9|AAA82452.4| 1256|Caenorhabditis elegans Prion-like-(q/n...    28   5.8  
AF053496-1|AAC08577.1| 4063|Caenorhabditis elegans beta chain sp...    28   5.8  
Z47811-1|CAA87785.3|  201|Caenorhabditis elegans Hypothetical pr...    28   7.6  
U67947-1|AAB07557.2| 1147|Caenorhabditis elegans Hypothetical pr...    28   7.6  

>U21854-1|AAA87454.1|  310|Caenorhabditis elegans cCAF1 protein
           protein.
          Length = 310

 Score =  107 bits (257), Expect = 8e-24
 Identities = 52/112 (46%), Positives = 72/112 (64%), Gaps = 4/112 (3%)
 Frame = +2

Query: 293 MPSASFGSISLPGGS----DCGIKDVWNHNLHEEFQIIRQVVQKYHWVAMDTEFPGVVAR 460
           M S+S G     GG+    +  I +V+  N+ EEF  IR  V+ Y +VAMDTEFPGVVA 
Sbjct: 1   MASSSSGGAGGAGGASGAPEVKIHNVYMSNVEEEFARIRGFVEDYPYVAMDTEFPGVVAT 60

Query: 461 PIGEFRSTADYQYQLLRCNVDLLRIIQLGLTFMDENGKTPPGYTTWQFNFKF 616
           P+G FRS  D+ YQ + CNV++L++IQ+G   +++ G+ PP    WQFNF F
Sbjct: 61  PLGTFRSKEDFNYQQVFCNVNMLKLIQVGFAMVNDKGELPPTGDVWQFNFNF 112



 Score = 33.1 bits (72), Expect = 0.20
 Identities = 11/32 (34%), Positives = 23/32 (71%)
 Frame = +3

Query: 612 NFNLQEDMYAQDSIDLLQNSGLQFRKHEEDGI 707
           NF+  EDM++ +S+++L+ +G+ F   + +GI
Sbjct: 111 NFSFAEDMFSHESVEMLRQAGIDFTLLQNNGI 142


>AL132860-28|CAB60501.1|  310|Caenorhabditis elegans Hypothetical
           protein Y56A3A.20 protein.
          Length = 310

 Score =  107 bits (257), Expect = 8e-24
 Identities = 52/112 (46%), Positives = 72/112 (64%), Gaps = 4/112 (3%)
 Frame = +2

Query: 293 MPSASFGSISLPGGS----DCGIKDVWNHNLHEEFQIIRQVVQKYHWVAMDTEFPGVVAR 460
           M S+S G     GG+    +  I +V+  N+ EEF  IR  V+ Y +VAMDTEFPGVVA 
Sbjct: 1   MASSSSGGAGGAGGASGAPEVKIHNVYMSNVEEEFARIRGFVEDYPYVAMDTEFPGVVAT 60

Query: 461 PIGEFRSTADYQYQLLRCNVDLLRIIQLGLTFMDENGKTPPGYTTWQFNFKF 616
           P+G FRS  D+ YQ + CNV++L++IQ+G   +++ G+ PP    WQFNF F
Sbjct: 61  PLGTFRSKEDFNYQQVFCNVNMLKLIQVGFAMVNDKGELPPTGDVWQFNFNF 112



 Score = 33.1 bits (72), Expect = 0.20
 Identities = 11/32 (34%), Positives = 23/32 (71%)
 Frame = +3

Query: 612 NFNLQEDMYAQDSIDLLQNSGLQFRKHEEDGI 707
           NF+  EDM++ +S+++L+ +G+ F   + +GI
Sbjct: 111 NFSFAEDMFSHESVEMLRQAGIDFTLLQNNGI 142


>Z74474-1|CAA98954.2|  566|Caenorhabditis elegans Hypothetical
           protein K10C8.1 protein.
          Length = 566

 Score = 33.5 bits (73), Expect = 0.15
 Identities = 20/49 (40%), Positives = 27/49 (55%)
 Frame = +2

Query: 419 WVAMDTEFPGVVARPIGEFRSTADYQYQLLRCNVDLLRIIQLGLTFMDE 565
           +VA+D EF G+    I     T + +YQ+LR NV   R  QLGLT   +
Sbjct: 25  FVAIDFEFLGLDVSAIS-LHDTVESRYQILRDNVIKYRPCQLGLTLFKQ 72


>AF047663-6|AAC04447.1|  368|Caenorhabditis elegans Hypothetical
           protein W09G12.7 protein.
          Length = 368

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +2

Query: 341 CGIKDVWNHNLHEEFQIIRQVVQKYH 418
           CG ++   H  HEEF    +VV KYH
Sbjct: 330 CGAQNEHEHTHHEEFSKTDKVVNKYH 355


>U42439-3|AAA83507.1|  310|Caenorhabditis elegans Hypothetical
           protein F19C7.3 protein.
          Length = 310

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +2

Query: 338 DCGIKDVWNHNLHEEFQIIRQVVQKYHWV 424
           DC +  +W H LH   Q+I Q +  YHW+
Sbjct: 202 DCKVIKLWRHQLHP--QLINQFI--YHWM 226


>Z81570-7|CAB04608.2| 4063|Caenorhabditis elegans Hypothetical protein
            R31.1 protein.
          Length = 4063

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = +2

Query: 356  VWNHNLHEEFQIIRQVVQKYHWVAMD 433
            +W  N+HEE +++RQ ++  H +  D
Sbjct: 2169 MWQSNVHEELKLLRQDIEARHAMLKD 2194


>Z75956-5|CAB00130.2| 4063|Caenorhabditis elegans Hypothetical protein
            R31.1 protein.
          Length = 4063

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = +2

Query: 356  VWNHNLHEEFQIIRQVVQKYHWVAMD 433
            +W  N+HEE +++RQ ++  H +  D
Sbjct: 2169 MWQSNVHEELKLLRQDIEARHAMLKD 2194


>U41272-9|AAA82452.4| 1256|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 62
           protein.
          Length = 1256

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 15/48 (31%), Positives = 19/48 (39%)
 Frame = +2

Query: 203 FVQNTQNKSKTTASKKTDNSSRLETDKRYKMPSASFGSISLPGGSDCG 346
           F  N QN+S     +  +NSS  +     K P  S  S  L  G   G
Sbjct: 160 FQANLQNRSNRVMQQTPNNSSNHQNHLSLKQPHLSMNSTQLQSGFQTG 207


>AF053496-1|AAC08577.1| 4063|Caenorhabditis elegans beta chain
            spectrin homolog Sma1 protein.
          Length = 4063

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = +2

Query: 356  VWNHNLHEEFQIIRQVVQKYHWVAMD 433
            +W  N+HEE +++RQ ++  H +  D
Sbjct: 2169 MWQSNVHEELKLLRQDIEARHAMLKD 2194


>Z47811-1|CAA87785.3|  201|Caenorhabditis elegans Hypothetical
           protein K02C4.2 protein.
          Length = 201

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 11/31 (35%), Positives = 17/31 (54%), Gaps = 3/31 (9%)
 Frame = +1

Query: 28  QCICVLNHSCNKISEKKPI---ILSCDSIFP 111
           QC+C     C K + K+P+   +  C+ IFP
Sbjct: 21  QCLCKPYEKCLKAARKEPVEKCLAKCEKIFP 51


>U67947-1|AAB07557.2| 1147|Caenorhabditis elegans Hypothetical
           protein H03E18.1 protein.
          Length = 1147

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = +2

Query: 179 KRPSTGA*FVQNTQNKSKTTASKKTDNSSRLETDKRYKMPSAS 307
           K P+  +  V +     KT A KKTD  + +ET  + K+P +S
Sbjct: 851 KNPTKDSGSVSSASGNGKTVAMKKTDQKT-IETLLKAKIPESS 892


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,403,170
Number of Sequences: 27780
Number of extensions: 388639
Number of successful extensions: 992
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 962
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 992
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1666201324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)