Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0057
         (713 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    25   0.54 
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    23   2.2  
AY656663-1|AAT68000.1|  148|Apis mellifera pteropsin protein.          23   2.2  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    22   6.6  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    21   8.8  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    21   8.8  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    21   8.8  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     21   8.8  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 25.4 bits (53), Expect = 0.54
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = -3

Query: 363 FQTSFIPQSLPPGSDMEPKLADGILYRLSVSKREELSVFFDAV 235
           FQ + +  SL   ++  PKLA  +LY++ ++  E   V   AV
Sbjct: 662 FQRTLMVGSLGKLTETNPKLARSVLYKIYLNTMESHEVRCTAV 704


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -2

Query: 700 SSSCFLNCRPEFCNRSIESCAY 635
           +S   L C P   NR I+ C+Y
Sbjct: 171 TSPPLLGCFPRATNRDIKKCSY 192


>AY656663-1|AAT68000.1|  148|Apis mellifera pteropsin protein.
          Length = 148

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 8/23 (34%), Positives = 11/23 (47%)
 Frame = +1

Query: 406 PKVSLGSYGYRISRSSCTTNWRI 474
           P    GSYG      SC+ +W +
Sbjct: 33  PLFGWGSYGPEAGNVSCSVSWEV 55


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -3

Query: 324 SDMEPKLADGILYRLSVS 271
           +D + KLA GI  RLS+S
Sbjct: 217 NDRKEKLATGIYQRLSLS 234


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 8/27 (29%), Positives = 14/27 (51%)
 Frame = +1

Query: 40  VLNHSCNKISEKKPIILSCDSIFPRNV 120
           V+N++C  +    P   + DS F  +V
Sbjct: 442 VINYNCRSLVASVPFFANADSNFVSDV 468


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 8/27 (29%), Positives = 14/27 (51%)
 Frame = +1

Query: 40  VLNHSCNKISEKKPIILSCDSIFPRNV 120
           V+N++C  +    P   + DS F  +V
Sbjct: 410 VINYNCRSLVASVPFFANADSNFVSDV 436


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 8/29 (27%), Positives = 16/29 (55%)
 Frame = +1

Query: 34  ICVLNHSCNKISEKKPIILSCDSIFPRNV 120
           IC L+HS   ++    +IL C+ +   ++
Sbjct: 225 ICKLSHSNASVAGGMEMILLCEKVAKEDI 253


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 8/29 (27%), Positives = 16/29 (55%)
 Frame = +1

Query: 34  ICVLNHSCNKISEKKPIILSCDSIFPRNV 120
           IC L+HS   ++    +IL C+ +   ++
Sbjct: 225 ICKLSHSNASVAGGMEMILLCEKVAKEDI 253


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 212,930
Number of Sequences: 438
Number of extensions: 4608
Number of successful extensions: 11
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22048515
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)