Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0056
         (653 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    27   0.18 
AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.    24   0.95 
AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.    24   0.95 
U04271-1|AAA03708.1|  490|Tribolium castaneum alpha-amylase I pr...    23   2.9  
X06905-1|CAA30009.1|  489|Tribolium castaneum protein ( Triboliu...    21   6.7  
U04271-2|AAA03709.1|  490|Tribolium castaneum alpha-amylase II p...    21   6.7  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      21   6.7  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      21   6.7  

>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 26.6 bits (56), Expect = 0.18
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = -3

Query: 72  CVMLHSSSPPPFRHSAQP 19
           C  L SS PPP++ SAQP
Sbjct: 323 CWSLTSSPPPPYQISAQP 340


>AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.
          Length = 712

 Score = 24.2 bits (50), Expect = 0.95
 Identities = 9/30 (30%), Positives = 18/30 (60%)
 Frame = +3

Query: 462 TELPPTHPIRLGLALNFSVFYYEILNSPDR 551
           T+  P HP+R+   ++FS   Y+ + + D+
Sbjct: 372 TDGEPVHPVRVNTIISFSGERYDFVINADQ 401


>AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.
          Length = 717

 Score = 24.2 bits (50), Expect = 0.95
 Identities = 9/30 (30%), Positives = 18/30 (60%)
 Frame = +3

Query: 462 TELPPTHPIRLGLALNFSVFYYEILNSPDR 551
           T+  P HP+R+   ++FS   Y+ + + D+
Sbjct: 372 TDGEPVHPVRVNTIISFSGERYDFVINADQ 401


>U04271-1|AAA03708.1|  490|Tribolium castaneum alpha-amylase I
           protein.
          Length = 490

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 10/25 (40%), Positives = 12/25 (48%)
 Frame = +2

Query: 305 HPQLTDRRIKSFLLQNEGRLPPVPG 379
           HP  T R + SF   N  + PP  G
Sbjct: 334 HPYGTTRLMSSFAFDNNDQGPPQDG 358


>X06905-1|CAA30009.1|  489|Tribolium castaneum protein ( Tribolium
           castaneum mRNAfor alhpa amylase 3'region. ).
          Length = 489

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = +2

Query: 305 HPQLTDRRIKSFLLQNEGRLPP 370
           HP  T R + SF   N  + PP
Sbjct: 333 HPYGTTRLMSSFAFDNNDQGPP 354


>U04271-2|AAA03709.1|  490|Tribolium castaneum alpha-amylase II
           protein.
          Length = 490

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = +2

Query: 305 HPQLTDRRIKSFLLQNEGRLPP 370
           HP  T R + SF   N  + PP
Sbjct: 334 HPYGTTRLMSSFAFDNNDQGPP 355


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 11/29 (37%), Positives = 12/29 (41%)
 Frame = +2

Query: 236 PQPG*EGAP*HLL*HPRCPRQVPHPQLTD 322
           P PG    P HL  HP      P  +L D
Sbjct: 232 PHPGLSPHPPHLSSHPAIVTPGPKQELPD 260


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 11/29 (37%), Positives = 12/29 (41%)
 Frame = +2

Query: 236 PQPG*EGAP*HLL*HPRCPRQVPHPQLTD 322
           P PG    P HL  HP      P  +L D
Sbjct: 124 PHPGLSPHPPHLSSHPAIVTPGPKQELPD 152


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 110,076
Number of Sequences: 336
Number of extensions: 2084
Number of successful extensions: 12
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16865010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)