Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0056
         (653 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC8E11.02c |rad24||14-3-3 protein Rad24|Schizosaccharomyces po...   327   7e-91
SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces po...   323   2e-89
SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFII...    27   2.4  
SPACUNK4.14 |mdb1||BRCT domain protein|Schizosaccharomyces pombe...    27   2.4  
SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5 |Schizo...    26   4.1  
SPBC16A3.17c |||membrane transporter|Schizosaccharomyces pombe|c...    26   4.1  
SPAC11D3.06 |||MatE family transporter|Schizosaccharomyces pombe...    26   5.5  
SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos...    26   5.5  
SPBC1861.01c |cnp3|SPBC56F2.13|CENP-C|Schizosaccharomyces pombe|...    25   9.5  

>SPAC8E11.02c |rad24||14-3-3 protein Rad24|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 270

 Score =  327 bits (804), Expect = 7e-91
 Identities = 162/217 (74%), Positives = 186/217 (85%)
 Frame = +3

Query: 3   AKLAEQAERYDEMVEAMKNVASRNVSDNELTVEERNLLSVAYKNVIGARRASWRIISSIE 182
           AKLAEQAERY+ MVE MK+VAS   +D ELTVEERNLLSVAYKNVIGARRASWRI+SSIE
Sbjct: 13  AKLAEQAERYEGMVENMKSVAS---TDQELTVEERNLLSVAYKNVIGARRASWRIVSSIE 69

Query: 183 QKEETKGAEDKLNMIRAYRSQVEKELRDICSDILGVLDKYLIPSSQTGESKVFYYKMKGD 362
           QKEE+KG   ++ +I+ YR ++E+EL  IC DIL VL+K+LIP++ + ESKVFYYKMKGD
Sbjct: 70  QKEESKGNTAQVELIKEYRQKIEQELDTICQDILTVLEKHLIPNAASAESKVFYYKMKGD 129

Query: 363 YHRYLAEFATGNDRKEAAENSLVAYKAASDIAMTELPPTHPIRLGLALNFSVFYYEILNS 542
           Y+RYLAEFA G  R+ +A+ SL  YKAAS+IA  EL PTHPIRLGLALNFSVFYYEILNS
Sbjct: 130 YYRYLAEFAVGEKRQHSADQSLEGYKAASEIATAELAPTHPIRLGLALNFSVFYYEILNS 189

Query: 543 PDRACRLAKAAFDDAIGELDTLSEESYKDSTLIMQLL 653
           PDRAC LAK AFD+AI ELD+LSEESYKDSTLIMQLL
Sbjct: 190 PDRACYLAKQAFDEAISELDSLSEESYKDSTLIMQLL 226


>SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 270

 Score =  323 bits (793), Expect = 2e-89
 Identities = 159/217 (73%), Positives = 185/217 (85%)
 Frame = +3

Query: 3   AKLAEQAERYDEMVEAMKNVASRNVSDNELTVEERNLLSVAYKNVIGARRASWRIISSIE 182
           AKLAEQAERY+EMVE MK VA  N   ++L+VEERNLLSVAYKN+IGARRASWRIISSIE
Sbjct: 12  AKLAEQAERYEEMVENMKKVACSN---DKLSVEERNLLSVAYKNIIGARRASWRIISSIE 68

Query: 183 QKEETKGAEDKLNMIRAYRSQVEKELRDICSDILGVLDKYLIPSSQTGESKVFYYKMKGD 362
           QKEE++G   +  +I+ YR ++E EL DIC D+L VL+K+LIP++ TGESKVFYYKMKGD
Sbjct: 69  QKEESRGNTRQAALIKEYRKKIEDELSDICHDVLSVLEKHLIPAATTGESKVFYYKMKGD 128

Query: 363 YHRYLAEFATGNDRKEAAENSLVAYKAASDIAMTELPPTHPIRLGLALNFSVFYYEILNS 542
           Y+RYLAEF  G   KEAA++SL AYKAASDIA+ ELPPT P+RLGLALNFSVFYYEIL+S
Sbjct: 129 YYRYLAEFTVGEVCKEAADSSLEAYKAASDIAVAELPPTDPMRLGLALNFSVFYYEILDS 188

Query: 543 PDRACRLAKAAFDDAIGELDTLSEESYKDSTLIMQLL 653
           P+ AC LAK  FD+AI ELD+LSEESYKDSTLIMQLL
Sbjct: 189 PESACHLAKQVFDEAISELDSLSEESYKDSTLIMQLL 225


>SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFIID
            complex subunit Taf111|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 979

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 20/79 (25%), Positives = 36/79 (45%)
 Frame = +3

Query: 9    LAEQAERYDEMVEAMKNVASRNVSDNELTVEERNLLSVAYKNVIGARRASWRIISSIEQK 188
            +A+Q   Y+E +  + N   R +S N       NL  +A K  I +    +   +    +
Sbjct: 785  VAKQQRAYEEEINRIWNAQKRGLSIN-------NLEELAKKYGINSIHDDYVESNEETTR 837

Query: 189  EETKGAEDKLNMIRAYRSQ 245
            EET  ++  L ++R YR +
Sbjct: 838  EETPSSDKVLRIVRLYRDK 856


>SPACUNK4.14 |mdb1||BRCT domain protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 520

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -2

Query: 331 DSPVCELGMRYLSRTPRMSEQMSRSSFSTW 242
           DSP   +G R +S+  R  +   RSS S+W
Sbjct: 481 DSPTKVIGKRNVSKASRTGQGRKRSSRSSW 510


>SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1065

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 9/27 (33%), Positives = 19/27 (70%)
 Frame = +3

Query: 219 NMIRAYRSQVEKELRDICSDILGVLDK 299
           N +RA + +++K+L+D+  +   +LDK
Sbjct: 243 NQLRADKKKLKKDLKDLVEEFQPILDK 269


>SPBC16A3.17c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 599

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 10/37 (27%), Positives = 22/37 (59%)
 Frame = -2

Query: 286 PRMSEQMSRSSFSTWLRYALIMFNLSSAPFVSSFCSM 176
           P ++E  + +S S+W+  A ++ + +  P V  FC++
Sbjct: 121 PTIAEDFNDTSSSSWIGSAYVLASNAVLPAVGVFCNI 157


>SPAC11D3.06 |||MatE family transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 455

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 18/47 (38%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
 Frame = +3

Query: 441 AASDIAMT--ELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAA 575
           AA  + MT  +L  T P  LG+  +  V YY     PD A   AK A
Sbjct: 265 AAQSVIMTTDQLLNTIPFGLGIITSNRVAYYLGAGLPDNASLTAKVA 311


>SPBC18H10.03 |tif35||translation initiation factor
           eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 282

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +3

Query: 249 EKELRDICSDILGVLDKYLIPSSQTGESKVFYY 347
           E+ELRD+     G+   YL    +TG +K F +
Sbjct: 215 EEELRDLFRRFGGIQRVYLAKDKETGRAKGFAF 247


>SPBC1861.01c |cnp3|SPBC56F2.13|CENP-C|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 643

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 15/40 (37%), Positives = 23/40 (57%)
 Frame = -1

Query: 653 QQLHDERGVLVALLRERVQFADGVVEGGLGEPAGAVRAVQ 534
           QQ+ +++    +L +E   FA GVVE     PAGA + V+
Sbjct: 532 QQISNQQLKFASLFKEEPSFAAGVVE----MPAGAEKPVK 567


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,951,471
Number of Sequences: 5004
Number of extensions: 34747
Number of successful extensions: 163
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)