Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0056
         (653 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_36368| Best HMM Match : 14-3-3 (HMM E-Value=0)                     248   4e-66
SB_34219| Best HMM Match : No HMM Matches (HMM E-Value=.)             233   9e-62
SB_37955| Best HMM Match : 14-3-3 (HMM E-Value=6.5861e-44)            149   2e-36
SB_34217| Best HMM Match : No HMM Matches (HMM E-Value=.)             149   3e-36
SB_34218| Best HMM Match : No HMM Matches (HMM E-Value=.)              70   1e-12
SB_56522| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.6e-30)        36   0.029
SB_51222| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.35 
SB_24031| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.4  
SB_34997| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  
SB_10819| Best HMM Match : DCX (HMM E-Value=6.3e-19)                   28   7.6  

>SB_36368| Best HMM Match : 14-3-3 (HMM E-Value=0)
          Length = 248

 Score =  248 bits (606), Expect = 4e-66
 Identities = 131/220 (59%), Positives = 154/220 (70%), Gaps = 3/220 (1%)
 Frame = +3

Query: 3   AKLAEQAERYDEMVEAMKNVASRNVSDNELTVEERNLLSVAYKNVIGARRASWRIISSIE 182
           AK+AEQAERYD+MV AM  V       N+   EERNLLSVAYKNV+GARR+SWR+ISS+E
Sbjct: 18  AKMAEQAERYDDMVNAMSAVTKEGKPLND---EERNLLSVAYKNVVGARRSSWRVISSME 74

Query: 183 QKEETKGAEDKLNMIRAYRSQVEKELRDICSDILGVLDKYLIPSSQ---TGESKVFYYKM 353
           Q    K  E+   + + YR  +  EL   C+++L +L+ YL+   Q     E+KVFY KM
Sbjct: 75  Q----KAPEEMAALTKKYREDITNELNGKCAEVLDILENYLLKDGQDDINTEAKVFYLKM 130

Query: 354 KGDYHRYLAEFATGNDRKEAAENSLVAYKAASDIAMTELPPTHPIRLGLALNFSVFYYEI 533
           +GDYHRYL E A G+ RKE  E S  AYK AS  A  EL P+HPIRLGLALNFSVFYYEI
Sbjct: 131 RGDYHRYLVEVAEGDSRKENIEKSREAYKDASAKA-EELSPSHPIRLGLALNFSVFYYEI 189

Query: 534 LNSPDRACRLAKAAFDDAIGELDTLSEESYKDSTLIMQLL 653
            N P  AC+LAK AFDDAI  LD L +ESYKDSTLIMQLL
Sbjct: 190 ENKPPEACKLAKEAFDDAIAVLDNLKDESYKDSTLIMQLL 229


>SB_34219| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 309

 Score =  233 bits (570), Expect = 9e-62
 Identities = 121/207 (58%), Positives = 149/207 (71%), Gaps = 2/207 (0%)
 Frame = +3

Query: 39  MVEAMKNVASRNVSDNELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEETKGAEDKL 218
           M +AMK      +S+  L  EERNLLSVAYKNV+GA+R+SWR+ISSIEQK E  G+E K 
Sbjct: 1   MAKAMKEATE--ISET-LEQEERNLLSVAYKNVVGAKRSSWRVISSIEQKLE--GSERKK 55

Query: 219 NMIRAYRSQVEKELRDICSDILGVLDKYLIPSSQTGESKVFYYKMKGDYHRYLAEFATGN 398
                YR  +E EL ++C  +L +L+  LIP++Q+ ESKVFY KMKGDY+RY  E A  +
Sbjct: 56  QNTETYRQTIENELNEVCETVLKLLESKLIPNAQSTESKVFYLKMKGDYYRYEGEVAGAD 115

Query: 399 DRKEAAENSLVAYKAASDIAMTE--LPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKA 572
            R+E  + ++ AY  A +IA  +  LPPT PIRLGLALNFSVFYYEI+    +AC LAK 
Sbjct: 116 RRREVVQKAMKAYSEAQEIAEKDPKLPPTDPIRLGLALNFSVFYYEIVEDSKQACDLAKK 175

Query: 573 AFDDAIGELDTLSEESYKDSTLIMQLL 653
           AFDDAI ELDTLSE+ YKDSTLIMQLL
Sbjct: 176 AFDDAIAELDTLSEDQYKDSTLIMQLL 202



 Score =  107 bits (258), Expect = 6e-24
 Identities = 55/88 (62%), Positives = 65/88 (73%), Gaps = 3/88 (3%)
 Frame = +3

Query: 399 DRKEAAENSLVAYKAASDIAMT---ELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAK 569
           D     E +L AYK A + A T   +L PT PIRLGLALNFSVF+YEI  + + AC+LAK
Sbjct: 204 DNLTVVEKALQAYKEAKEAAETGDGKLAPTDPIRLGLALNFSVFHYEIQENQEEACKLAK 263

Query: 570 AAFDDAIGELDTLSEESYKDSTLIMQLL 653
            AFDDAI ELD+L+E+ YKDSTLIMQLL
Sbjct: 264 QAFDDAIAELDSLNEDQYKDSTLIMQLL 291


>SB_37955| Best HMM Match : 14-3-3 (HMM E-Value=6.5861e-44)
          Length = 251

 Score =  149 bits (361), Expect = 2e-36
 Identities = 78/118 (66%), Positives = 93/118 (78%), Gaps = 1/118 (0%)
 Frame = +3

Query: 3   AKLAEQAERYDEMVEAMKNVASRNVSDNELTVEERNLLSVAYKNVIGARRASWRIISSIE 182
           AKLAEQAERYD+MV +MK VA       EL+ E+RNLLSVAYKNVIGARRASWRII+SIE
Sbjct: 11  AKLAEQAERYDDMVNSMKEVAKMGT---ELSTEDRNLLSVAYKNVIGARRASWRIITSIE 67

Query: 183 QKEETKGAE-DKLNMIRAYRSQVEKELRDICSDILGVLDKYLIPSSQTGESKVFYYKM 353
           QKEE+KG +  KL MIR YR  +E+EL+ IC +IL +LD  LI +SQ+ ESKVFY K+
Sbjct: 68  QKEESKGEDMAKLEMIRNYRKTIEEELKTICGEILSLLDDSLIKNSQSEESKVFYNKI 125


>SB_34217| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 219

 Score =  149 bits (360), Expect = 3e-36
 Identities = 69/135 (51%), Positives = 103/135 (76%)
 Frame = +3

Query: 3   AKLAEQAERYDEMVEAMKNVASRNVSDNELTVEERNLLSVAYKNVIGARRASWRIISSIE 182
           AKL+EQ +RYDEM + MK V+ +     +L+ EERNLLSV+YKN++G RR+SWR+ISSIE
Sbjct: 91  AKLSEQCDRYDEMAKIMKEVSEKYP---KLSKEERNLLSVSYKNIVGQRRSSWRVISSIE 147

Query: 183 QKEETKGAEDKLNMIRAYRSQVEKELRDICSDILGVLDKYLIPSSQTGESKVFYYKMKGD 362
           +K         L +++ Y++ +EKEL+D+C ++LG+L++ LIP ++  E+KVFY+K+KGD
Sbjct: 148 EK---TAESSSLAIVKKYKACIEKELKDLCKEVLGILER-LIPGAEDEENKVFYFKLKGD 203

Query: 363 YHRYLAEFATGNDRK 407
           Y+RYLAEF+ G + K
Sbjct: 204 YYRYLAEFSHGQEHK 218


>SB_34218| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 607

 Score = 70.1 bits (164), Expect = 1e-12
 Identities = 37/94 (39%), Positives = 57/94 (60%)
 Frame = +3

Query: 3   AKLAEQAERYDEMVEAMKNVASRNVSDNELTVEERNLLSVAYKNVIGARRASWRIISSIE 182
           AKLAEQ ER+++++  MK     N S N+   E RNLLSV YKNV+G++R +WR +    
Sbjct: 197 AKLAEQTERFEDVILYMKKAIEINPSLNK---EHRNLLSVGYKNVVGSKRFAWRHLHHDA 253

Query: 183 QKEETKGAEDKLNMIRAYRSQVEKELRDICSDIL 284
            +      + +L  I  Y+ ++E EL+ +C +IL
Sbjct: 254 LQSGRYIRDSQLKGIIKYKEKIEMELKTLCREIL 287


>SB_56522| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.6e-30)
          Length = 3071

 Score = 35.9 bits (79), Expect = 0.029
 Identities = 27/107 (25%), Positives = 54/107 (50%), Gaps = 9/107 (8%)
 Frame = +3

Query: 6    KLAEQAERYDEMV----EAMKNVASRNVSDNELTVEE----RNLLSVAYKNVIGARRA-S 158
            KL +  E Y + +    +A +N    N   N+L +E     R+L S+ + N +   R   
Sbjct: 1961 KLKDLEESYQKALKDNEDAERNYLDLNRKYNKLVMEHGNISRDLESLKHDNDLKNERIID 2020

Query: 159  WRIISSIEQKEETKGAEDKLNMIRAYRSQVEKELRDICSDILGVLDK 299
                 ++ Q++E + A++K+N + AY++  E++LR+   D++    K
Sbjct: 2021 LESSLAVYQEQELQSAKNKINRLEAYKTSYEEKLRNQQEDLVAAQQK 2067


>SB_51222| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2520

 Score = 32.3 bits (70), Expect = 0.35
 Identities = 31/136 (22%), Positives = 64/136 (47%), Gaps = 2/136 (1%)
 Frame = +3

Query: 6    KLAEQAERYDEMVEAMKNVASRNVSDNELTVEERNLLSVAYKNVIGARRASWRIISSIEQ 185
            KLAE   +Y + +E M N A + + + + + +E+ L +   K  + A++ S  + ++I Q
Sbjct: 1463 KLAETQSQYSQDMEEM-NQAKKEL-EIKYSTKEKELRAELEKREVQAKQTSETMTANISQ 1520

Query: 186  --KEETKGAEDKLNMIRAYRSQVEKELRDICSDILGVLDKYLIPSSQTGESKVFYYKMKG 359
              + E K  ++ L +   ++ +  +      S I  +++++    SQ          +K 
Sbjct: 1521 LNEREKKHKQEMLVLENNWKEKYSEIEERYSSQISNIIEQHQREISQ----------LKS 1570

Query: 360  DYHRYLAEFATGNDRK 407
            D+H  LAE    N +K
Sbjct: 1571 DHHSELAELKAHNQQK 1586


>SB_24031| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1176

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 16/46 (34%), Positives = 22/46 (47%)
 Frame = +3

Query: 348 KMKGDYHRYLAEFATGNDRKEAAENSLVAYKAASDIAMTELPPTHP 485
           ++K  Y ++L +F      KE AENS  A   A+  A    PP  P
Sbjct: 859 EVKEAYRKWLDDFMKSAREKEIAENSRYASTQAATSAPYASPPPSP 904


>SB_34997| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 845

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 16/47 (34%), Positives = 25/47 (53%)
 Frame = -2

Query: 310 GMRYLSRTPRMSEQMSRSSFSTWLRYALIMFNLSSAPFVSSFCSMEE 170
           G R   RTP ++  +   S  +W  YALI+F+L    F+   C++ E
Sbjct: 77  GSRLKGRTPHLTRALM--SILSWSEYALILFSL----FIGVACNILE 117


>SB_10819| Best HMM Match : DCX (HMM E-Value=6.3e-19)
          Length = 1199

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 17/49 (34%), Positives = 21/49 (42%), Gaps = 3/49 (6%)
 Frame = +2

Query: 89   ADSGGEEPAVGRLQERDRRPPRLLADHLLHR---TEGRNKRRRGQIEHD 226
            A  GG    +GR  E DR  P+        R    EG  +RRRG+   D
Sbjct: 1082 AQKGGYASQIGRRNEPDREQPKQRVGRRDERDPDDEGTGRRRRGRERDD 1130


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,597,400
Number of Sequences: 59808
Number of extensions: 291589
Number of successful extensions: 983
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 893
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 970
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)