Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0055
(718 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef... 388 e-109
SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef... 387 e-109
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef... 387 e-109
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 210 1e-55
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote... 205 6e-54
SPBC9B6.04c |tuf1||mitochondrial translation elongation factor E... 115 6e-27
SPBC660.10 |||translation elongation factor G|Schizosaccharomyce... 58 1e-09
SPBC1306.01c ||SPBC409.22c|translation elongation factor G|Schiz... 48 1e-06
SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces po... 48 2e-06
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac... 46 7e-06
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon... 46 7e-06
SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma su... 42 9e-05
SPBC1271.15c |||translation initiation factor IF-2Mt|Schizosacch... 35 0.001
SPAP8A3.05 |||ski complex subunit Ski7 |Schizosaccharomyces pomb... 38 0.001
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma... 34 0.023
SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo... 33 0.041
SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr 1||... 30 0.38
SPBC106.10 |pka1|tpk, git6|cAMP-dependent protein kinase catalyt... 29 0.50
SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce... 29 0.88
SPBC776.06c |||spindle pole body interacting protein |Schizosacc... 29 0.88
SPBC11B10.05c |rsp1||random septum position protein Rsp1|Schizos... 27 2.0
SPAC3A11.08 |pcu4|cul4, Cul-4|cullin 4|Schizosaccharomyces pombe... 26 4.7
SPCC1739.14 |npp106||nucleoporin Npp106|Schizosaccharomyces pomb... 26 6.2
SPAC6F6.09 |||NuA4 histone acetyltransferase complex subunit |Sc... 26 6.2
SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|c... 26 6.2
SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3 |Schizos... 26 6.2
>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
Length = 460
Score = 388 bits (954), Expect = e-109
Identities = 179/223 (80%), Positives = 200/223 (89%)
Frame = +3
Query: 48 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 227
MGKEK HIN+VVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEA E+GKGSFKYAWVL
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVL 60
Query: 228 DKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGT 407
DKLKAERERGITIDIALWKFET KY VT+IDAPGHRDFIKNMITGTSQADCAVLI+ GT
Sbjct: 61 DKLKAERERGITIDIALWKFETPKYNVTVIDAPGHRDFIKNMITGTSQADCAVLIIGGGT 120
Query: 408 GEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYHEARYEEIKKEVSSYIKK 587
GEFEAGISK+GQTREHALLA+TLGVKQLIV VNKMD+T + +AR+EEI KE S++IKK
Sbjct: 121 GEFEAGISKDGQTREHALLAYTLGVKQLIVAVNKMDTT--GWSQARFEEIVKETSNFIKK 178
Query: 588 IGYNPATVAFVPISGWHGDNMLEPSDKMPWFKGWTIDRKDGKV 716
+G+NP TV FVP+SG+ GDNM+EP+ MPW++GW + K G V
Sbjct: 179 VGFNPKTVPFVPVSGFQGDNMIEPTTNMPWYQGWQKETKAGVV 221
>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
Length = 460
Score = 387 bits (953), Expect = e-109
Identities = 178/223 (79%), Positives = 200/223 (89%)
Frame = +3
Query: 48 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 227
MGKEK HIN+VVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEA E+GKGSFKYAWVL
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVL 60
Query: 228 DKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGT 407
DKLKAERERGITIDIALWKFET KY VT+IDAPGHRDFIKNMITGTSQADCA+LI+ GT
Sbjct: 61 DKLKAERERGITIDIALWKFETPKYNVTVIDAPGHRDFIKNMITGTSQADCAILIIGGGT 120
Query: 408 GEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYHEARYEEIKKEVSSYIKK 587
GEFEAGISK+GQTREHALLA+TLGVKQLIV VNKMD+T + +AR+EEI KE S++IKK
Sbjct: 121 GEFEAGISKDGQTREHALLAYTLGVKQLIVAVNKMDTT--GWSQARFEEIVKETSNFIKK 178
Query: 588 IGYNPATVAFVPISGWHGDNMLEPSDKMPWFKGWTIDRKDGKV 716
+G+NP TV FVP+SG+ GDNM+EP+ MPW++GW + K G V
Sbjct: 179 VGFNPKTVPFVPVSGFQGDNMIEPTTNMPWYQGWQKETKAGVV 221
>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
Length = 460
Score = 387 bits (953), Expect = e-109
Identities = 178/223 (79%), Positives = 200/223 (89%)
Frame = +3
Query: 48 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 227
MGKEK HIN+VVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEA E+GKGSFKYAWVL
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVL 60
Query: 228 DKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGT 407
DKLKAERERGITIDIALWKFET KY VT+IDAPGHRDFIKNMITGTSQADCA+LI+ GT
Sbjct: 61 DKLKAERERGITIDIALWKFETPKYNVTVIDAPGHRDFIKNMITGTSQADCAILIIGGGT 120
Query: 408 GEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYHEARYEEIKKEVSSYIKK 587
GEFEAGISK+GQTREHALLA+TLGVKQLIV VNKMD+T + +AR+EEI KE S++IKK
Sbjct: 121 GEFEAGISKDGQTREHALLAYTLGVKQLIVAVNKMDTT--GWSQARFEEIVKETSNFIKK 178
Query: 588 IGYNPATVAFVPISGWHGDNMLEPSDKMPWFKGWTIDRKDGKV 716
+G+NP TV FVP+SG+ GDNM+EP+ MPW++GW + K G V
Sbjct: 179 VGFNPKTVPFVPVSGFQGDNMIEPTTNMPWYQGWQKETKAGVV 221
>SPCC584.04 |sup35|erf3|translation release factor eRF3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 210 bits (513), Expect = 1e-55
Identities = 97/213 (45%), Positives = 144/213 (67%), Gaps = 4/213 (1%)
Frame = +3
Query: 60 KTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLK 239
K H+NIV IGHVD+GKST G++++ G +DKRT+EK E+EA+E GK S+ +W LD
Sbjct: 236 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTS 295
Query: 240 AERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFE 419
ERE+G T+++ FET +++DAPGH+ ++ NMI G SQAD VL+++A GEFE
Sbjct: 296 EEREKGKTVEVGRAYFETEHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFE 355
Query: 420 AGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYHEARYEEIKKEVSSYIKKI-GY 596
AG + GQTREHA+LA T G+ L+V +NKMD + E RY+E ++S +++++ GY
Sbjct: 356 AGFERGGQTREHAVLARTQGINHLVVVINKMDEPSVQWSEERYKECVDKLSMFLRRVAGY 415
Query: 597 NPAT-VAFVPISGWHGDNMLEPSDK--MPWFKG 686
N T V ++P+S + G N+ + D PW++G
Sbjct: 416 NSKTDVKYMPVSAYTGQNVKDRVDSSVCPWYQG 448
>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 592
Score = 205 bits (500), Expect = 6e-54
Identities = 103/227 (45%), Positives = 143/227 (62%), Gaps = 3/227 (1%)
Frame = +3
Query: 24 IAQP*STKMGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKG 203
++ P + K +++VV GHVDSGKST G ++++ G I+ R+++K EA GKG
Sbjct: 163 VSVPEIFEQSNPKPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKG 222
Query: 204 SFKYAWVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCA 383
SF YAW+LD + ER RG+T+D+A FE+ K I DAPGHRDFI MI G S AD A
Sbjct: 223 SFSYAWLLDTTEEERARGVTMDVASTTFESDKKIYEIGDAPGHRDFISGMIAGASSADFA 282
Query: 384 VLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYHEARYEEIKK 563
VL+V + FE G +NGQTREHA L LG+ +++V VNK+D + E R++EIK
Sbjct: 283 VLVVDSSQNNFERGFLENGQTREHAYLLRALGISEIVVSVNKLDLMS--WSEDRFQEIKN 340
Query: 564 EVSSY-IKKIGYNPATVAFVPISGWHGDNML--EPSDKMPWFKGWTI 695
VS + IK +G+ + V FVPIS G N++ + SD W+KG T+
Sbjct: 341 IVSDFLIKMVGFKTSNVHFVPISAISGTNLIQKDSSDLYKWYKGPTL 387
>SPBC9B6.04c |tuf1||mitochondrial translation elongation factor
EF-Tu Tuf1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 439
Score = 115 bits (277), Expect = 6e-27
Identities = 69/175 (39%), Positives = 99/175 (56%)
Frame = +3
Query: 54 KEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDK 233
++K H+NI IGHVD GK+T T I KC ++G+ SF +DK
Sbjct: 49 RKKPHVNIGTIGHVDHGKTTLTA-AITKC--------------LSDLGQASFMDYSQIDK 93
Query: 234 LKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGE 413
E+ RGITI A ++ET+ + +D PGH D+IKNMITG + D A+++V+A G+
Sbjct: 94 APEEKARGITISSAHVEYETANRHYAHVDCPGHADYIKNMITGAATMDGAIIVVSATDGQ 153
Query: 414 FEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYHEARYEEIKKEVSSY 578
QTREH LLA +GVKQ++V +NK+D EP E E+++ +S Y
Sbjct: 154 MP-------QTREHLLLARQVGVKQIVVYINKVDMVEPDMIELVEMEMRELLSEY 201
>SPBC660.10 |||translation elongation factor G|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 813
Score = 58.0 bits (134), Expect = 1e-09
Identities = 48/148 (32%), Positives = 70/148 (47%)
Frame = +3
Query: 72 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 251
N+ +I H+D+GK+T T ++Y G F + G V+D L AER+
Sbjct: 30 NVGIIAHIDAGKTTLTEKMLYYGG---------FTSHFGNVDTGDT----VMDYLPAERQ 76
Query: 252 RGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGIS 431
RGITI+ A F + +ID PGH DF + + D AV I+ + AG+
Sbjct: 77 RGITINSAAISFTWRNQRINLIDTPGHADFTFEVERSVAVLDGAVAII-----DGSAGV- 130
Query: 432 KNGQTREHALLAFTLGVKQLIVGVNKMD 515
QT+ A G+ ++I VNKMD
Sbjct: 131 -EAQTKVVWKQATKRGIPKVIF-VNKMD 156
>SPBC1306.01c ||SPBC409.22c|translation elongation factor
G|Schizosaccharomyces pombe|chr 2|||Manual
Length = 770
Score = 48.4 bits (110), Expect = 1e-06
Identities = 46/147 (31%), Positives = 67/147 (45%), Gaps = 19/147 (12%)
Frame = +3
Query: 72 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 251
NI + H+DSGK+T T ++Y G I K+ E+ +G +D ++ ERE
Sbjct: 61 NIGISAHIDSGKTTFTERVLYYTGRI---------KDIHEV-RGKDNVGAKMDFMELERE 110
Query: 252 RGITIDIA----LWK---------------FETSKYYVTIIDAPGHRDFIKNMITGTSQA 374
+GITI A W+ FE S Y + IID PGH DF +
Sbjct: 111 KGITIQSAATHCTWERTVDQIEANEKQKTDFEKS-YNINIIDTPGHIDFTIEVERALRVL 169
Query: 375 DCAVLIVAAGTGEFEAGISKNGQTREH 455
D AVL++ A +G I+ + Q R +
Sbjct: 170 DGAVLVLCAVSGVQSQTITVDRQMRRY 196
>SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 646
Score = 47.6 bits (108), Expect = 2e-06
Identities = 34/117 (29%), Positives = 54/117 (46%), Gaps = 4/117 (3%)
Frame = +3
Query: 72 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 251
N VI H+D GKST + ++ G I++ + F LDKL+ ER
Sbjct: 60 NWAVIAHIDHGKSTLSDCILKLTGVINEHNF-----------RNQF-----LDKLEVERR 103
Query: 252 RGITIDIA----LWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 410
RGIT+ ++ + Y + +ID PGH DF ++ + + +L+V A G
Sbjct: 104 RGITVKAQTCSMIYYYHGQSYLLNLIDTPGHVDFRAEVMHSLAACEGCILLVDASQG 160
>SPCP31B10.07 |eft202||translation elongation factor 2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 842
Score = 45.6 bits (103), Expect = 7e-06
Identities = 38/119 (31%), Positives = 55/119 (46%), Gaps = 3/119 (2%)
Frame = +3
Query: 48 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGID--KRTIEKF-EKEAQEMGKGSFKYA 218
MGK N+ VI HVD GKST T L+ K G I K +F + A E +G +
Sbjct: 13 MGKPSNVRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGDARFMDTRADEQERGVTIKS 72
Query: 219 WVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 395
+ L AE D+ + + + V +ID+PGH DF + D A+++V
Sbjct: 73 TAI-SLFAEMTDDDMKDMK-EPADGTDFLVNLIDSPGHVDFSSEVTAALRVTDGALVVV 129
>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
elongation factor 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 45.6 bits (103), Expect = 7e-06
Identities = 38/119 (31%), Positives = 55/119 (46%), Gaps = 3/119 (2%)
Frame = +3
Query: 48 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGID--KRTIEKF-EKEAQEMGKGSFKYA 218
MGK N+ VI HVD GKST T L+ K G I K +F + A E +G +
Sbjct: 13 MGKPSNVRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGDARFMDTRADEQERGVTIKS 72
Query: 219 WVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 395
+ L AE D+ + + + V +ID+PGH DF + D A+++V
Sbjct: 73 TAI-SLFAEMTDDDMKDMK-EPADGTDFLVNLIDSPGHVDFSSEVTAALRVTDGALVVV 129
>SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 446
Score = 41.9 bits (94), Expect = 9e-05
Identities = 24/93 (25%), Positives = 41/93 (44%)
Frame = +3
Query: 303 YVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGV 482
+V+ +D PGH + M+ G + D A+L++A QT EH + +
Sbjct: 109 HVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNES------CPQPQTSEHLAAIEIMQL 162
Query: 483 KQLIVGVNKMDSTEPPYHEARYEEIKKEVSSYI 581
K +I+ NK+D E Y+ I K + +
Sbjct: 163 KHIIILQNKVDLIRESAAEEHYQSILKFIKGTV 195
>SPBC1271.15c |||translation initiation factor
IF-2Mt|Schizosaccharomyces pombe|chr 2|||Manual
Length = 686
Score = 35.1 bits (77), Expect(2) = 0.001
Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 2/74 (2%)
Frame = +3
Query: 195 GKGSFKYAWVLDKLKAERERGITIDIALWK--FETSKYYVTIIDAPGHRDFIKNMITGTS 368
GK + A+ + + GIT I + F+ ++T +D PGH F G +
Sbjct: 183 GKTTLLDAFRKSTIASTEHGGITQKIGAFTVPFDKGSKFITFLDTPGHMAFEAMRKRGAN 242
Query: 369 QADCAVLIVAAGTG 410
AD VL+VA G
Sbjct: 243 IADIVVLVVAGDDG 256
Score = 22.2 bits (45), Expect(2) = 0.001
Identities = 7/13 (53%), Positives = 11/13 (84%)
Frame = +3
Query: 75 IVVIGHVDSGKST 113
+ ++GHVD GK+T
Sbjct: 174 VTLMGHVDHGKTT 186
>SPAP8A3.05 |||ski complex subunit Ski7 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 695
Score = 38.3 bits (85), Expect = 0.001
Identities = 50/219 (22%), Positives = 83/219 (37%), Gaps = 7/219 (3%)
Frame = +3
Query: 60 KTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKF-----EKEAQEMGKGSFKYAWV 224
K ++++G SGK T L ++ G D +T++K +KE+ S K W
Sbjct: 278 KPRTKLLLLGPPKSGKKTLLSRLFFQIGSFDPKTMQKCTVLNAKKESLSSVLKSTKTKWY 337
Query: 225 LDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAG 404
+ + ID L F T+ A +F+K+ I
Sbjct: 338 DFETFSNSYSSTIIDFPLGIFTTN--------ASSRDNFLKHSSLFQVMNTAIFTIDCLN 389
Query: 405 TGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYHEARYEEIKKEVSSYIK 584
E GIS Q L L + + + KMD E + E ++ + + S++K
Sbjct: 390 PLEGLDGISSILQ------LMNGLSISSYMFAITKMDEIE--WDENKFINLVNSIQSFLK 441
Query: 585 KIGYNPATVAFVPISGWHGDNMLEPSDK--MPWFKGWTI 695
+ F+PISG G N+ S + W+K T+
Sbjct: 442 ESCGIIEKSKFIPISGLKGTNLTSISQEKLSQWYKSDTL 480
>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1000
Score = 33.9 bits (74), Expect = 0.023
Identities = 38/165 (23%), Positives = 63/165 (38%), Gaps = 4/165 (2%)
Frame = +3
Query: 72 NIVVIGHVDSGKSTTTGHLIYKCGGIDKR---TIEKFEKEAQEMGKGSFKYAWVLDKLKA 242
N ++ HVD GK+T L+ G I + T+ + E+ +G + K A
Sbjct: 21 NFTLLAHVDHGKTTLADSLLASNGIISSKLAGTVRFLDFREDEITRG------ITMKSSA 74
Query: 243 ERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEA 422
I K Y + +ID+PGH DF + + + D A ++V A G
Sbjct: 75 ISLFFKVISQNDEKRVEKDYLINLIDSPGHVDFSSEVSSASRLCDGAFVLVDAVEGVCSQ 134
Query: 423 GISKNGQT-REHALLAFTLGVKQLIVGVNKMDSTEPPYHEARYEE 554
I+ Q + + + ++ K+ E YH R E
Sbjct: 135 TITVLRQAWIDRIKVILVINKMDRLITELKLSPIEAHYHLLRLVE 179
>SPAC56F8.03 |||translation initiation factor IF2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1079
Score = 33.1 bits (72), Expect = 0.041
Identities = 27/107 (25%), Positives = 48/107 (44%), Gaps = 2/107 (1%)
Frame = +3
Query: 81 VIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEA--QEMGKGSFKYAWVLDKLKAERER 254
++GHVD+GK+ +L + +++ E Q++G F + K K ++
Sbjct: 489 ILGHVDTGKTKLLDNL-------RRSNVQEGEAGGITQQIGATYFPIESIKQKTKVVNKK 541
Query: 255 GITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 395
G K + + + IID PGH F GTS + A+L++
Sbjct: 542 G--------KLQYNIPGLLIIDTPGHESFTNLRSRGTSLCNIAILVI 580
>SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 380
Score = 29.9 bits (64), Expect = 0.38
Identities = 15/44 (34%), Positives = 27/44 (61%), Gaps = 3/44 (6%)
Frame = +3
Query: 228 DKLKAER-ERGITIDIALWKFETSKYYV--TIIDAPGHRDFIKN 350
+K++A+ E+ + I+I + E +++ T+ID PG DFI N
Sbjct: 60 EKVRAKHAEKTVEIEITKAELEEKNFHLRLTVIDTPGFGDFINN 103
>SPBC106.10 |pka1|tpk, git6|cAMP-dependent protein kinase catalytic
subunit Pka1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 512
Score = 29.5 bits (63), Expect = 0.50
Identities = 12/26 (46%), Positives = 19/26 (73%), Gaps = 1/26 (3%)
Frame = -3
Query: 551 FIASLMVGRFGRVHFIHAD-NKLFYA 477
F+ +L G FGRVH + ++ N+L+YA
Sbjct: 203 FLQTLGTGSFGRVHLVQSNHNRLYYA 228
>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 983
Score = 28.7 bits (61), Expect = 0.88
Identities = 28/113 (24%), Positives = 47/113 (41%), Gaps = 5/113 (4%)
Frame = +3
Query: 72 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 251
+ +V GH+ GKS L+Y + + + S +Y D ERE
Sbjct: 142 SFIVAGHLHHGKSALLDLLVYYT-----------HPDTKPPKRRSLRYT---DTHYLERE 187
Query: 252 RGITID-----IALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 395
R ++I +A+ + + ID PGH DF+ + + +D VL+V
Sbjct: 188 RVMSIKSTPLTLAVSDMKGKTFAFQCIDTPGHVDFVDEVAAPMAISDGVVLVV 240
>SPBC776.06c |||spindle pole body interacting protein
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 598
Score = 28.7 bits (61), Expect = 0.88
Identities = 18/53 (33%), Positives = 25/53 (47%)
Frame = -3
Query: 551 FIASLMVGRFGRVHFIHADNKLFYAKSESKQGVFASLSILTDTGFELASSGCH 393
F+A LM+ RVH D LF+ K VF+ S + D FE + S +
Sbjct: 34 FLAELMLP--DRVHERREDWSLFFIHFSKKSNVFSLFSNVDDINFEPSDSNMY 84
>SPBC11B10.05c |rsp1||random septum position protein
Rsp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 494
Score = 27.5 bits (58), Expect = 2.0
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Frame = +3
Query: 561 KEVS---SYIKKIGYNPATVAFVPISGWHGDNMLEPSDKMPWFKGWTIDRKDGKV 716
KEVS SYI +P T +G+ +N+++P P FKG ++ + K+
Sbjct: 159 KEVSTSKSYISSGYLHPKTSPIFKKNGYATENVVDPISSSPRFKGPNYNKFNAKL 213
>SPAC3A11.08 |pcu4|cul4, Cul-4|cullin 4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 734
Score = 26.2 bits (55), Expect = 4.7
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = -1
Query: 475 RVKASRACSRVCPFLLIPASNSPVP 401
R S +C+R+ P +++P S P P
Sbjct: 601 RTLQSLSCARIRPLVMVPKSKKPSP 625
>SPCC1739.14 |npp106||nucleoporin Npp106|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 933
Score = 25.8 bits (54), Expect = 6.2
Identities = 13/45 (28%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Frame = -3
Query: 626 YRYERHSSGIVTNFLNVRRHFFLNLFIASLMVGRFGR-VHFIHAD 495
Y+ E+ + N + + N F+A LM G F R + F+H +
Sbjct: 524 YQLEKKIVAFGPRYFNPKNNTPTNYFLALLMCGEFERAISFLHTN 568
>SPAC6F6.09 |||NuA4 histone acetyltransferase complex subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 138
Score = 25.8 bits (54), Expect = 6.2
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +3
Query: 519 TEPPYHEARYEEIKKEVSSYIKK 587
+EPP + + YE+ KKE+ I+K
Sbjct: 9 SEPPVNVSYYEQCKKELHEMIEK 31
>SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1316
Score = 25.8 bits (54), Expect = 6.2
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +1
Query: 85 SAMWTLESPLLPAISSTSAAALINVQSR 168
S +W L S +P I TS +L +QSR
Sbjct: 1204 SGVWALISRWIPFIPKTSFPSLAEIQSR 1231
>SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 556
Score = 25.8 bits (54), Expect = 6.2
Identities = 7/30 (23%), Positives = 19/30 (63%)
Frame = +3
Query: 618 VPISGWHGDNMLEPSDKMPWFKGWTIDRKD 707
+P+ + G ++ P+D++ + K W +D+ +
Sbjct: 445 LPVRMFSGPHLANPNDELVYEKDWKLDKSE 474
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,117,074
Number of Sequences: 5004
Number of extensions: 66440
Number of successful extensions: 265
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 235
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 254
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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