Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0055
(718 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation fact... 418 e-117
U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation fact... 418 e-117
U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation fact... 246 4e-95
U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation fact... 304 3e-83
Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical pr... 225 2e-59
Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical pr... 225 2e-59
Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical pr... 213 8e-56
U51994-8|AAO21382.1| 77|Caenorhabditis elegans Elongation fact... 138 3e-33
D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation fact... 96 2e-20
D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation fact... 96 2e-20
AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongatio... 96 2e-20
U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation f... 93 1e-19
AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial... 93 1e-19
L13200-4|AAA28191.2| 645|Caenorhabditis elegans Hypothetical pr... 60 2e-09
Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical pr... 56 3e-08
AC006714-2|AAK29716.2| 689|Caenorhabditis elegans Hypothetical ... 56 3e-08
Z70780-15|CAA94822.2| 702|Caenorhabditis elegans Hypothetical p... 44 9e-06
Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical pr... 46 3e-05
M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation fact... 45 5e-05
Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical pr... 45 6e-05
Z83235-9|CAI79209.1| 705|Caenorhabditis elegans Hypothetical pr... 40 0.002
Z83235-8|CAB05774.2| 894|Caenorhabditis elegans Hypothetical pr... 40 0.002
AC025716-9|AAK39619.1| 469|Caenorhabditis elegans Hypothetical ... 38 0.007
Z78200-2|CAB01578.1| 588|Caenorhabditis elegans Hypothetical pr... 37 0.013
U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation fact... 34 0.088
M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein. 34 0.088
AC024817-55|AAF59563.3| 366|Caenorhabditis elegans Hypothetical... 33 0.20
DQ867020-1|ABI49097.1| 1074|Caenorhabditis elegans eukaryotic tr... 30 1.9
AC090999-3|AAK26147.1| 536|Caenorhabditis elegans Hypothetical ... 30 1.9
Z66513-12|CAI46602.1| 492|Caenorhabditis elegans Hypothetical p... 29 2.5
Z66513-11|CAA91332.3| 427|Caenorhabditis elegans Hypothetical p... 29 2.5
U40802-3|AAM81105.1| 369|Caenorhabditis elegans Dense body prot... 29 2.5
U40802-2|AAM81104.1| 1010|Caenorhabditis elegans Dense body prot... 29 2.5
U40802-1|AAM81106.1| 999|Caenorhabditis elegans Dense body prot... 29 2.5
J04804-1|AAA28002.1| 1010|Caenorhabditis elegans protein ( C.ele... 29 2.5
U55365-5|AAN84867.2| 350|Caenorhabditis elegans Serpentine rece... 29 3.3
Z99709-6|CAB16863.1| 459|Caenorhabditis elegans Hypothetical pr... 29 4.4
Z75710-2|CAB00025.2| 381|Caenorhabditis elegans Hypothetical pr... 28 7.7
>U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation factor
protein 4, isoforma protein.
Length = 463
Score = 418 bits (1030), Expect = e-117
Identities = 193/221 (87%), Positives = 204/221 (92%)
Frame = +3
Query: 48 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 227
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 228 DKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGT 407
DKLKAERERGITIDIALWKFET+KYY+TIIDAPGHRDFIKNMITGTSQADCAVL+VA GT
Sbjct: 61 DKLKAERERGITIDIALWKFETAKYYITIIDAPGHRDFIKNMITGTSQADCAVLVVACGT 120
Query: 408 GEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYHEARYEEIKKEVSSYIKK 587
GEFEAGISKNGQTREHALLA TLGVKQLIV NKMDSTEPP+ EAR+ EI EVS +IKK
Sbjct: 121 GEFEAGISKNGQTREHALLAQTLGVKQLIVACNKMDSTEPPFSEARFTEITNEVSGFIKK 180
Query: 588 IGYNPATVAFVPISGWHGDNMLEPSDKMPWFKGWTIDRKDG 710
IGYNP V FVPISG++GDNMLE S MPWFKGW ++RK+G
Sbjct: 181 IGYNPKAVPFVPISGFNGDNMLEVSSNMPWFKGWAVERKEG 221
>U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation factor
protein 3 protein.
Length = 463
Score = 418 bits (1030), Expect = e-117
Identities = 193/221 (87%), Positives = 204/221 (92%)
Frame = +3
Query: 48 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 227
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 228 DKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGT 407
DKLKAERERGITIDIALWKFET+KYY+TIIDAPGHRDFIKNMITGTSQADCAVL+VA GT
Sbjct: 61 DKLKAERERGITIDIALWKFETAKYYITIIDAPGHRDFIKNMITGTSQADCAVLVVACGT 120
Query: 408 GEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYHEARYEEIKKEVSSYIKK 587
GEFEAGISKNGQTREHALLA TLGVKQLIV NKMDSTEPP+ EAR+ EI EVS +IKK
Sbjct: 121 GEFEAGISKNGQTREHALLAQTLGVKQLIVACNKMDSTEPPFSEARFTEITNEVSGFIKK 180
Query: 588 IGYNPATVAFVPISGWHGDNMLEPSDKMPWFKGWTIDRKDG 710
IGYNP V FVPISG++GDNMLE S MPWFKGW ++RK+G
Sbjct: 181 IGYNPKAVPFVPISGFNGDNMLEVSSNMPWFKGWAVERKEG 221
>U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation factor
protein 4, isoformd protein.
Length = 429
Score = 246 bits (602), Expect(2) = 4e-95
Identities = 113/117 (96%), Positives = 116/117 (99%)
Frame = +3
Query: 48 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 227
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 228 DKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVA 398
DKLKAERERGITIDIALWKFET+KYY+TIIDAPGHRDFIKNMITGTSQADCAVL+VA
Sbjct: 61 DKLKAERERGITIDIALWKFETAKYYITIIDAPGHRDFIKNMITGTSQADCAVLVVA 117
Score = 120 bits (289), Expect(2) = 4e-95
Identities = 51/74 (68%), Positives = 60/74 (81%)
Frame = +3
Query: 489 LIVGVNKMDSTEPPYHEARYEEIKKEVSSYIKKIGYNPATVAFVPISGWHGDNMLEPSDK 668
L+V NKMDSTEPP+ EAR+ EI EVS +IKKIGYNP V FVPISG++GDNMLE S
Sbjct: 114 LVVACNKMDSTEPPFSEARFTEITNEVSGFIKKIGYNPKAVPFVPISGFNGDNMLEVSSN 173
Query: 669 MPWFKGWTIDRKDG 710
MPWFKGW ++RK+G
Sbjct: 174 MPWFKGWAVERKEG 187
>U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation factor
protein 4, isoformc protein.
Length = 267
Score = 304 bits (747), Expect = 3e-83
Identities = 142/149 (95%), Positives = 146/149 (97%)
Frame = +3
Query: 48 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 227
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 228 DKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGT 407
DKLKAERERGITIDIALWKFET+KYY+TIIDAPGHRDFIKNMITGTSQADCAVL+VA GT
Sbjct: 61 DKLKAERERGITIDIALWKFETAKYYITIIDAPGHRDFIKNMITGTSQADCAVLVVACGT 120
Query: 408 GEFEAGISKNGQTREHALLAFTLGVKQLI 494
GEFEAGISKNGQTREHALLA TLGVKQL+
Sbjct: 121 GEFEAGISKNGQTREHALLAQTLGVKQLV 149
>Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical
protein K07A12.4b protein.
Length = 592
Score = 225 bits (551), Expect = 2e-59
Identities = 107/211 (50%), Positives = 152/211 (72%), Gaps = 1/211 (0%)
Frame = +3
Query: 57 EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKL 236
+K IN++V+GHVD+GKST GHL++ +D RTI+KF+ EA GK SF YAWVLD+
Sbjct: 167 DKDLINLIVVGHVDAGKSTLMGHLLHDLEVVDSRTIDKFKHEAARNGKASFAYAWVLDET 226
Query: 237 KAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEF 416
+ ERERG+T+DI FETS + ++DAPGH+DFI NMITGTSQAD A+L+V A TGEF
Sbjct: 227 EEERERGVTMDIGRTSFETSHRRIVLLDAPGHKDFISNMITGTSQADAAILVVNATTGEF 286
Query: 417 EAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYHEARYEEIKKEVSSYI-KKIG 593
E G GQT+EHALL +LGV QLIV VNK+D+ + + + R++EIK +S ++ ++ G
Sbjct: 287 ETGFENGGQTKEHALLLRSLGVTQLIVAVNKLDTVD--WSQDRFDEIKNNLSVFLTRQAG 344
Query: 594 YNPATVAFVPISGWHGDNMLEPSDKMPWFKG 686
++ FVP+SG+ G+N+++ + + W+ G
Sbjct: 345 FSKP--KFVPVSGFTGENLIKRME-LDWYDG 372
>Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical
protein K07A12.4a protein.
Length = 610
Score = 225 bits (551), Expect = 2e-59
Identities = 107/211 (50%), Positives = 152/211 (72%), Gaps = 1/211 (0%)
Frame = +3
Query: 57 EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKL 236
+K IN++V+GHVD+GKST GHL++ +D RTI+KF+ EA GK SF YAWVLD+
Sbjct: 185 DKDLINLIVVGHVDAGKSTLMGHLLHDLEVVDSRTIDKFKHEAARNGKASFAYAWVLDET 244
Query: 237 KAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEF 416
+ ERERG+T+DI FETS + ++DAPGH+DFI NMITGTSQAD A+L+V A TGEF
Sbjct: 245 EEERERGVTMDIGRTSFETSHRRIVLLDAPGHKDFISNMITGTSQADAAILVVNATTGEF 304
Query: 417 EAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYHEARYEEIKKEVSSYI-KKIG 593
E G GQT+EHALL +LGV QLIV VNK+D+ + + + R++EIK +S ++ ++ G
Sbjct: 305 ETGFENGGQTKEHALLLRSLGVTQLIVAVNKLDTVD--WSQDRFDEIKNNLSVFLTRQAG 362
Query: 594 YNPATVAFVPISGWHGDNMLEPSDKMPWFKG 686
++ FVP+SG+ G+N+++ + + W+ G
Sbjct: 363 FSKP--KFVPVSGFTGENLIKRME-LDWYDG 390
>Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical
protein H19N07.1 protein.
Length = 532
Score = 213 bits (521), Expect = 8e-56
Identities = 95/198 (47%), Positives = 140/198 (70%), Gaps = 1/198 (0%)
Frame = +3
Query: 51 GKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLD 230
G K HIN+V +GHVD+GKST G L++ G +DKRT+EK+E+EA+E G+ S+ +W +D
Sbjct: 104 GTHKEHINMVFVGHVDAGKSTIGGQLMFLTGMVDKRTLEKYEREAKEKGRESWYLSWCMD 163
Query: 231 KLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 410
ERE+G T+++ FET K + TI+DAPGH+ F+ NMI G +QAD AVL+++A G
Sbjct: 164 TNDEEREKGKTVEVGRAYFETEKRHFTILDAPGHKSFVPNMIVGANQADLAVLVISARRG 223
Query: 411 EFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYHEARYEEIKKEVSSYIKKI 590
EFE G + GQTREH++L T GVK L++ VNKMD + E R++EI+ +++ +++K+
Sbjct: 224 EFETGFDRGGQTREHSMLVKTAGVKHLVILVNKMDDPTVKWEEERFKEIEGKLTPFLRKL 283
Query: 591 GYNPAT-VAFVPISGWHG 641
G+NP T + +VP SG G
Sbjct: 284 GFNPKTDITYVPCSGLTG 301
>U51994-8|AAO21382.1| 77|Caenorhabditis elegans Elongation factor
protein 4, isoformb protein.
Length = 77
Score = 138 bits (335), Expect = 3e-33
Identities = 63/67 (94%), Positives = 64/67 (95%)
Frame = +3
Query: 48 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 227
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 228 DKLKAER 248
DKLK +
Sbjct: 61 DKLKVTK 67
>D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 495
Score = 96.3 bits (229), Expect = 2e-20
Identities = 69/195 (35%), Positives = 100/195 (51%), Gaps = 3/195 (1%)
Frame = +3
Query: 21 HIAQP*STKMGK-EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMG 197
H+A P + K +K H+N+ IGHVD GK+T T + K+E
Sbjct: 33 HLAVPGGKAVFKRDKPHLNVGTIGHVDHGKTTLTSAITKILATSKGAKYRKYED------ 86
Query: 198 KGSFKYAWVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQAD 377
+D E+ RGITI+ ++ET+K + ID PGH D+IKNMITG +Q +
Sbjct: 87 ---------IDNAPEEKARGITINAFHLEYETAKRHYAHIDCPGHADYIKNMITGAAQME 137
Query: 378 CAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGV--KQLIVGVNKMDSTEPPYHEARYE 551
A+L+VAA G QTREH LLA +GV ++V +NK+D E P E R E
Sbjct: 138 GAILVVAATDGPMP-------QTREHLLLARQVGVPLDNIVVFMNKVD--EVPDAETR-E 187
Query: 552 EIKKEVSSYIKKIGY 596
++ ++ + + GY
Sbjct: 188 LVEMDIREQLNEFGY 202
>D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 496
Score = 96.3 bits (229), Expect = 2e-20
Identities = 69/195 (35%), Positives = 100/195 (51%), Gaps = 3/195 (1%)
Frame = +3
Query: 21 HIAQP*STKMGK-EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMG 197
H+A P + K +K H+N+ IGHVD GK+T T + K+E
Sbjct: 34 HLAVPGGKAVFKRDKPHLNVGTIGHVDHGKTTLTSAITKILATSKGAKYRKYED------ 87
Query: 198 KGSFKYAWVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQAD 377
+D E+ RGITI+ ++ET+K + ID PGH D+IKNMITG +Q +
Sbjct: 88 ---------IDNAPEEKARGITINAFHLEYETAKRHYAHIDCPGHADYIKNMITGAAQME 138
Query: 378 CAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGV--KQLIVGVNKMDSTEPPYHEARYE 551
A+L+VAA G QTREH LLA +GV ++V +NK+D E P E R E
Sbjct: 139 GAILVVAATDGPMP-------QTREHLLLARQVGVPLDNIVVFMNKVD--EVPDAETR-E 188
Query: 552 EIKKEVSSYIKKIGY 596
++ ++ + + GY
Sbjct: 189 LVEMDIREQLNEFGY 203
>AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 1 protein.
Length = 496
Score = 96.3 bits (229), Expect = 2e-20
Identities = 69/195 (35%), Positives = 100/195 (51%), Gaps = 3/195 (1%)
Frame = +3
Query: 21 HIAQP*STKMGK-EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMG 197
H+A P + K +K H+N+ IGHVD GK+T T + K+E
Sbjct: 34 HLAVPGGKAVFKRDKPHLNVGTIGHVDHGKTTLTSAITKILATSKGAKYRKYED------ 87
Query: 198 KGSFKYAWVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQAD 377
+D E+ RGITI+ ++ET+K + ID PGH D+IKNMITG +Q +
Sbjct: 88 ---------IDNAPEEKARGITINAFHLEYETAKRHYAHIDCPGHADYIKNMITGAAQME 138
Query: 378 CAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGV--KQLIVGVNKMDSTEPPYHEARYE 551
A+L+VAA G QTREH LLA +GV ++V +NK+D E P E R E
Sbjct: 139 GAILVVAATDGPMP-------QTREHLLLARQVGVPLDNIVVFMNKVD--EVPDAETR-E 188
Query: 552 EIKKEVSSYIKKIGY 596
++ ++ + + GY
Sbjct: 189 LVEMDIREQLNEFGY 203
>U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 2 protein.
Length = 439
Score = 93.5 bits (222), Expect = 1e-19
Identities = 62/164 (37%), Positives = 88/164 (53%), Gaps = 2/164 (1%)
Frame = +3
Query: 39 STKMGKEKTHINIVVIGHVDSGKSTTTGHL--IYKCGGIDKRTIEKFEKEAQEMGKGSFK 212
+T K ++N+ IGH+D GK+T T + + G K KF++
Sbjct: 36 ATAAATPKINVNVGTIGHIDHGKTTLTSAITRVQAKKGFAKHI--KFDE----------- 82
Query: 213 YAWVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLI 392
+DK K E++RGITI++A +E+ + D PGH DFIKNMI GTSQ D AVL+
Sbjct: 83 ----IDKGKEEKKRGITINVAHIGYESPLRRYSHTDCPGHSDFIKNMICGTSQMDVAVLV 138
Query: 393 VAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTE 524
+AA G E QT+EH +LA +GVK + + +NK D E
Sbjct: 139 IAATDGVME-------QTKEHLILAKQVGVKNMAIFINKADLVE 175
>AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial
elongation factorTu homologue protein.
Length = 439
Score = 93.5 bits (222), Expect = 1e-19
Identities = 62/164 (37%), Positives = 88/164 (53%), Gaps = 2/164 (1%)
Frame = +3
Query: 39 STKMGKEKTHINIVVIGHVDSGKSTTTGHL--IYKCGGIDKRTIEKFEKEAQEMGKGSFK 212
+T K ++N+ IGH+D GK+T T + + G K KF++
Sbjct: 36 ATAAATPKINVNVGTIGHIDHGKTTLTSAITRVQAKKGFAKHI--KFDE----------- 82
Query: 213 YAWVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLI 392
+DK K E++RGITI++A +E+ + D PGH DFIKNMI GTSQ D AVL+
Sbjct: 83 ----IDKGKEEKKRGITINVAHIGYESPLRRYSHTDCPGHSDFIKNMICGTSQMDVAVLV 138
Query: 393 VAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTE 524
+AA G E QT+EH +LA +GVK + + +NK D E
Sbjct: 139 IAATDGVME-------QTKEHLILAKQVGVKNMAIFINKADLVE 175
>L13200-4|AAA28191.2| 645|Caenorhabditis elegans Hypothetical
protein ZK1236.1 protein.
Length = 645
Score = 59.7 bits (138), Expect = 2e-09
Identities = 47/148 (31%), Positives = 67/148 (45%)
Frame = +3
Query: 72 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 251
N ++ HVD GKST L+ CG + +K+ +LDKL+ ERE
Sbjct: 44 NFGIVAHVDHGKSTLADRLLEMCGAVPPG-----QKQ-------------MLDKLQVERE 85
Query: 252 RGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGIS 431
RGIT+ Y + +ID PGH DF + + D +L+VAA G
Sbjct: 86 RGITVKAQTAALRHRGYLLNLIDTPGHVDFSAEVSRSLAVCDGILLLVAANQG------- 138
Query: 432 KNGQTREHALLAFTLGVKQLIVGVNKMD 515
QT + LAF + Q+I +NK+D
Sbjct: 139 VQAQTIANFWLAFEKNI-QIIPVINKID 165
>Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical
protein F29C12.4 protein.
Length = 750
Score = 56.0 bits (129), Expect = 3e-08
Identities = 47/148 (31%), Positives = 65/148 (43%)
Frame = +3
Query: 72 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 251
NI + H+DSGK+T T ++Y G ID E+ +G +D + ER+
Sbjct: 46 NIGISAHIDSGKTTVTERILYYAGRIDSM---------HEV-RGKDDVGATMDFMDLERQ 95
Query: 252 RGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGIS 431
RGITI A + + IID PGH DF + D AVL++ G G G+
Sbjct: 96 RGITIQSAATYVDWHGTNINIIDTPGHVDFTVEVERALRVLDGAVLVL-CGVG----GVQ 150
Query: 432 KNGQTREHALLAFTLGVKQLIVGVNKMD 515
T L + + I VNKMD
Sbjct: 151 SQTFTVNRQLARYNV---PFICFVNKMD 175
>AC006714-2|AAK29716.2| 689|Caenorhabditis elegans Hypothetical
protein Y119D3B.14 protein.
Length = 689
Score = 56.0 bits (129), Expect = 3e-08
Identities = 39/113 (34%), Positives = 53/113 (46%)
Frame = +3
Query: 72 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 251
NI VI HVD+GK+T T L+Y G I A + KG+ V D L ERE
Sbjct: 27 NIGVIAHVDAGKTTVTERLLYLAGAIHV---------AGHVDKGNT----VTDFLDIERE 73
Query: 252 RGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 410
RGIT+ A + + + +ID PGH DF + D V+++ G
Sbjct: 74 RGITVQSAAVNLDWKGHRINLIDTPGHVDFRVEVERCVRVLDGIVVVIDGSAG 126
>Z70780-15|CAA94822.2| 702|Caenorhabditis elegans Hypothetical
protein F46B6.6a protein.
Length = 702
Score = 44.0 bits (99), Expect(2) = 9e-06
Identities = 38/108 (35%), Positives = 48/108 (44%), Gaps = 1/108 (0%)
Frame = +3
Query: 195 GKGSFKYAWVLDKLKAERERGITIDIALWKFETSK-YYVTIIDAPGHRDFIKNMITGTSQ 371
GK + A ++ A GIT I + E +K VT +D PGH F G
Sbjct: 168 GKTTLLDAMRNSQIAAGEFGGITQHIGAFSVELTKGRRVTFLDTPGHAAFASMRARGAKG 227
Query: 372 ADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMD 515
AD VL+VAA G E QT + A V QL+V VNK+D
Sbjct: 228 ADIVVLVVAADDGVKE-------QTAQSIKFAKDANV-QLVVAVNKID 267
Score = 23.0 bits (47), Expect(2) = 9e-06
Identities = 7/13 (53%), Positives = 11/13 (84%)
Frame = +3
Query: 75 IVVIGHVDSGKST 113
+ ++GHVD GK+T
Sbjct: 159 VTIMGHVDHGKTT 171
>Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical
protein C47B2.7b protein.
Length = 500
Score = 46.0 bits (104), Expect = 3e-05
Identities = 52/199 (26%), Positives = 86/199 (43%), Gaps = 3/199 (1%)
Frame = +3
Query: 69 INIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAER 248
+N+ ++GHVDSGK+T T + E+G S A
Sbjct: 14 LNLGILGHVDSGKTTLT-------------------RRIAELGSTSAFDAHATSTTTDGI 54
Query: 249 ERGITIDIALWKFET-SKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAG 425
R T+D+ + S + +ID PGH I+ ++ ++ D A++I+ + AG
Sbjct: 55 RRN-TLDLGFSTMTSLSGRRLALIDCPGHSGLIRAVLAASTVFDMAIVII-----DVVAG 108
Query: 426 ISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYHEARYEEIKKEVSSYIKKIGY--N 599
I QT EH LLA ++I+ +NK D E +++ E K+V +K +G N
Sbjct: 109 IQP--QTAEHLLLASKFCPNRVIIVLNKCDLAE----KSKISESAKKVRKGLKSMGVDEN 162
Query: 600 PATVAFVPISGWHGDNMLE 656
V G+ + ML+
Sbjct: 163 SPIVEMSLADGYFKEEMLQ 181
>M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation factor
protein.
Length = 852
Score = 45.2 bits (102), Expect = 5e-05
Identities = 38/134 (28%), Positives = 64/134 (47%), Gaps = 13/134 (9%)
Frame = +3
Query: 48 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGI--DKRTIEKF---EKEAQE----MGK 200
M +++ N+ VI HVD GKST T L+ K G I K +F K+ QE +
Sbjct: 13 MDRKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGSKAGETRFTDTRKDEQERCITIKS 72
Query: 201 GSFKYAWVLDKLKAERERG----ITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTS 368
+ + L+K E +G T+++ K + + + + +ID+PGH DF +
Sbjct: 73 TAISLFFELEKKDLEFVKGENQFETVEVDGKKEKYNGFLINLIDSPGHVDFSSEVTAALG 132
Query: 369 QADCAVLIVAAGTG 410
D A+++V +G
Sbjct: 133 VTDGALVVVDCVSG 146
>Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical
protein F25H5.4 protein.
Length = 852
Score = 44.8 bits (101), Expect = 6e-05
Identities = 38/134 (28%), Positives = 64/134 (47%), Gaps = 13/134 (9%)
Frame = +3
Query: 48 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGI--DKRTIEKF---EKEAQE----MGK 200
M +++ N+ VI HVD GKST T L+ K G I K +F K+ QE +
Sbjct: 13 MDRKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGSKAGETRFTDTRKDEQERCITIKS 72
Query: 201 GSFKYAWVLDKLKAERERG----ITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTS 368
+ + L+K E +G T+++ K + + + + +ID+PGH DF +
Sbjct: 73 TAISLFFELEKKDLEFVKGENQFETVEVDGKKEKYNGFLINLIDSPGHVDFSSEVTAALR 132
Query: 369 QADCAVLIVAAGTG 410
D A+++V +G
Sbjct: 133 VTDGALVVVDCVSG 146
>Z83235-9|CAI79209.1| 705|Caenorhabditis elegans Hypothetical
protein K10C3.5b protein.
Length = 705
Score = 39.9 bits (89), Expect = 0.002
Identities = 46/174 (26%), Positives = 77/174 (44%), Gaps = 7/174 (4%)
Frame = +3
Query: 54 KEKTHI-NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLD 230
K HI N+ ++ HVD GK++ L+ I R G +Y +D
Sbjct: 15 KPAEHIRNVCLVAHVDHGKTSFADSLVSANAVISSRMA------------GKLRY---MD 59
Query: 231 KLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 410
+ E+ RGIT+ + + +ID+PGH DF + + +D A+L++ G
Sbjct: 60 SREDEQTRGITMKSSGISLLCEPLLINLIDSPGHVDFSGEVTSALILSDIALLLIDVIEG 119
Query: 411 ---EFEA---GISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYHEARYEE 554
+ EA + +NGQ A++ + +L V + KM S+E H +R E
Sbjct: 120 ICSQTEALIRQVIRNGQ----AMILVINKIDRLRVEL-KMSSSEAYQHMSRLIE 168
>Z83235-8|CAB05774.2| 894|Caenorhabditis elegans Hypothetical
protein K10C3.5a protein.
Length = 894
Score = 39.9 bits (89), Expect = 0.002
Identities = 46/174 (26%), Positives = 77/174 (44%), Gaps = 7/174 (4%)
Frame = +3
Query: 54 KEKTHI-NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLD 230
K HI N+ ++ HVD GK++ L+ I R G +Y +D
Sbjct: 15 KPAEHIRNVCLVAHVDHGKTSFADSLVSANAVISSRMA------------GKLRY---MD 59
Query: 231 KLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 410
+ E+ RGIT+ + + +ID+PGH DF + + +D A+L++ G
Sbjct: 60 SREDEQTRGITMKSSGISLLCEPLLINLIDSPGHVDFSGEVTSALILSDIALLLIDVIEG 119
Query: 411 ---EFEA---GISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYHEARYEE 554
+ EA + +NGQ A++ + +L V + KM S+E H +R E
Sbjct: 120 ICSQTEALIRQVIRNGQ----AMILVINKIDRLRVEL-KMSSSEAYQHMSRLIE 168
>AC025716-9|AAK39619.1| 469|Caenorhabditis elegans Hypothetical
protein Y39G10AR.8 protein.
Length = 469
Score = 37.9 bits (84), Expect = 0.007
Identities = 23/85 (27%), Positives = 37/85 (43%)
Frame = +3
Query: 303 YVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGV 482
+V+ +D PGH + M+ G + D A L+VA QT EH + +
Sbjct: 128 HVSFVDCPGHDILMATMLNGAAVMDAAFLLVAGNEP------CPQPQTSEHLAAVEIMQL 181
Query: 483 KQLIVGVNKMDSTEPPYHEARYEEI 557
L++ NK+D + YE+I
Sbjct: 182 NHLMILQNKVDIIKESQARENYEQI 206
>Z78200-2|CAB01578.1| 588|Caenorhabditis elegans Hypothetical
protein T04H1.2 protein.
Length = 588
Score = 37.1 bits (82), Expect = 0.013
Identities = 53/183 (28%), Positives = 79/183 (43%), Gaps = 8/183 (4%)
Frame = +3
Query: 69 INIVVIGHVDSGKSTTTGHLIYKC--GGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKA 242
+ + V+G D GKST G L C G K I F + E+ G K + V + +
Sbjct: 169 VRLAVVGGCDVGKSTLCGVLTQGCLDDGNGKARIGIF-RFPHEVRTG--KTSSVCNDVIG 225
Query: 243 ERERGITIDIALWKF----ETSKYYVTIIDAPGHRDFIKNMITGTS--QADCAVLIVAAG 404
RG ++ A E S VT+ID G + K I G + A L+VAA
Sbjct: 226 FDNRGKLVNYAQNSLEEMVEKSSKLVTLIDLAGDAKYQKTTIHGLTGYTPHFACLVVAA- 284
Query: 405 TGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYHEARYEEIKKEVSSYIK 584
+ GI+ TREH L L + ++ + KMD + ++I K+VS+ +
Sbjct: 285 ----DRGIT--WATREHLGLIAALNIPMFVL-ITKMDLVD----RQGLKKIIKDVSNLVA 333
Query: 585 KIG 593
K G
Sbjct: 334 KAG 336
>U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation factor
protein 1 protein.
Length = 974
Score = 34.3 bits (75), Expect = 0.088
Identities = 28/113 (24%), Positives = 47/113 (41%)
Frame = +3
Query: 72 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 251
N+ + GH+ GK+T L+ ++T +F + E F ++K +
Sbjct: 134 NVAIAGHLHHGKTTFLDCLM-------EQTHPEFYRA--EDADARFTDILFIEKQRGCSI 184
Query: 252 RGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 410
+ + I + Y + IID PGH +F M AD V++V A G
Sbjct: 185 KSQPVSIVAQDSRSKSYLLNIIDTPGHVNFSDEMTASYRLADGVVVMVDAHEG 237
>M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein.
Length = 849
Score = 34.3 bits (75), Expect = 0.088
Identities = 28/113 (24%), Positives = 47/113 (41%)
Frame = +3
Query: 72 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 251
N+ + GH+ GK+T L+ ++T +F + E F ++K +
Sbjct: 9 NVAIAGHLHHGKTTFLDCLM-------EQTHPEFYRA--EDADARFTDILFIEKQRGCSI 59
Query: 252 RGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 410
+ + I + Y + IID PGH +F M AD V++V A G
Sbjct: 60 KSQPVSIVAQDSRSKSYLLNIIDTPGHVNFSDEMTASYRLADGVVVMVDAHEG 112
>AC024817-55|AAF59563.3| 366|Caenorhabditis elegans Hypothetical
protein Y54G2A.28 protein.
Length = 366
Score = 33.1 bits (72), Expect = 0.20
Identities = 18/43 (41%), Positives = 23/43 (53%)
Frame = -1
Query: 508 LFTPTISCFTPRVKASRACSRVCPFLLIPASNSPVPAATISTA 380
LF PT+SC + AS S P + PA N VP AT+S +
Sbjct: 13 LFDPTLSCMATQNSASATLSCANPTVAAPA-NDDVPEATLSVS 54
>DQ867020-1|ABI49097.1| 1074|Caenorhabditis elegans eukaryotic
translation initiationfactor eIF5B protein.
Length = 1074
Score = 29.9 bits (64), Expect = 1.9
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +3
Query: 312 IIDAPGHRDFIKNMITGTSQADCAVLIV 395
IID PGH F G+S D A+L+V
Sbjct: 553 IIDTPGHESFSNLRTRGSSLCDFAILVV 580
>AC090999-3|AAK26147.1| 536|Caenorhabditis elegans Hypothetical
protein Y82E9BR.7 protein.
Length = 536
Score = 29.9 bits (64), Expect = 1.9
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = -2
Query: 207 RSPCPSLELLSQTSRLYVYQ 148
+ PCPSLEL S T+R Y+ Q
Sbjct: 378 KCPCPSLELSSSTARYYLRQ 397
>Z66513-12|CAI46602.1| 492|Caenorhabditis elegans Hypothetical
protein F54D5.5b protein.
Length = 492
Score = 29.5 bits (63), Expect = 2.5
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +3
Query: 150 DKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 251
+KR ++ EKE + F Y LDK+K ER+
Sbjct: 272 EKRKLKDMEKECNDAKNAMFHYMNQLDKVKKERD 305
>Z66513-11|CAA91332.3| 427|Caenorhabditis elegans Hypothetical
protein F54D5.5a protein.
Length = 427
Score = 29.5 bits (63), Expect = 2.5
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +3
Query: 150 DKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 251
+KR ++ EKE + F Y LDK+K ER+
Sbjct: 207 EKRKLKDMEKECNDAKNAMFHYMNQLDKVKKERD 240
>U40802-3|AAM81105.1| 369|Caenorhabditis elegans Dense body protein
1, isoform b protein.
Length = 369
Score = 29.5 bits (63), Expect = 2.5
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = -3
Query: 395 HDQYCAISLGSTRDHVLNEISMTGSINNG 309
HDQY A + T DH+LN + G G
Sbjct: 62 HDQYAAQNWRGTNDHLLNSVRAVGDAITG 90
>U40802-2|AAM81104.1| 1010|Caenorhabditis elegans Dense body protein
1, isoform a protein.
Length = 1010
Score = 29.5 bits (63), Expect = 2.5
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = -3
Query: 395 HDQYCAISLGSTRDHVLNEISMTGSINNG 309
HDQY A + T DH+LN + G G
Sbjct: 703 HDQYAAQNWRGTNDHLLNSVRAVGDAITG 731
>U40802-1|AAM81106.1| 999|Caenorhabditis elegans Dense body protein
1, isoform c protein.
Length = 999
Score = 29.5 bits (63), Expect = 2.5
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = -3
Query: 395 HDQYCAISLGSTRDHVLNEISMTGSINNG 309
HDQY A + T DH+LN + G G
Sbjct: 703 HDQYAAQNWRGTNDHLLNSVRAVGDAITG 731
>J04804-1|AAA28002.1| 1010|Caenorhabditis elegans protein (
C.elegans vinculin (deb-1) gene, complete cds. ).
Length = 1010
Score = 29.5 bits (63), Expect = 2.5
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = -3
Query: 395 HDQYCAISLGSTRDHVLNEISMTGSINNG 309
HDQY A + T DH+LN + G G
Sbjct: 703 HDQYAAQNWRGTNDHLLNSVRAVGDAITG 731
>U55365-5|AAN84867.2| 350|Caenorhabditis elegans Serpentine
receptor, class e (epsilon)protein 11 protein.
Length = 350
Score = 29.1 bits (62), Expect = 3.3
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +3
Query: 549 EEIKKEVSSYIKKIGYNPATVAFVPISGWHGDNM 650
E+ K+ +S+ +KIG+N ATV P+ G M
Sbjct: 284 EKWKRHLSATWRKIGFNSATVQVAPLCDTFGSEM 317
>Z99709-6|CAB16863.1| 459|Caenorhabditis elegans Hypothetical
protein C47B2.7a protein.
Length = 459
Score = 28.7 bits (61), Expect = 4.4
Identities = 10/17 (58%), Positives = 15/17 (88%)
Frame = +3
Query: 69 INIVVIGHVDSGKSTTT 119
+N+ ++GHVDSGK+T T
Sbjct: 14 LNLGILGHVDSGKTTLT 30
>Z75710-2|CAB00025.2| 381|Caenorhabditis elegans Hypothetical
protein D1081.4 protein.
Length = 381
Score = 27.9 bits (59), Expect = 7.7
Identities = 17/34 (50%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
Frame = +3
Query: 306 VTIIDAPGHRDFI--KNMITGTSQADCAVLIVAA 401
V IID+ G RDFI KN+ GT AD +++ AA
Sbjct: 73 VQIIDSSGSRDFIGMKNLYIGT--ADAFLVVFAA 104
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,332,333
Number of Sequences: 27780
Number of extensions: 374110
Number of successful extensions: 1243
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 1134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1226
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1676746902
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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