Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0051
         (640 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A3.06 |||CGI-48 family|Schizosaccharomyces pombe|chr 2|||M...    27   2.3  
SPBC336.02 |||18S rRNA dimethylase|Schizosaccharomyces pombe|chr...    27   3.0  
SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces po...    26   5.3  
SPBC146.03c |cut3|smc4, smc4|condensin subunit Cut3|Schizosaccha...    25   7.0  
SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyc...    25   7.0  
SPBC106.12c |||THO complex subunit |Schizosaccharomyces pombe|ch...    25   7.0  
SPBC26H8.10 |dis3|rrp44|3'-5' exoribonuclease subunit Dis3 |Schi...    25   7.0  
SPBC4F6.17c |||mitochondrial matrix chaperone Hsp78 |Schizosacch...    25   7.0  
SPBC582.06c |mcp6|hrs1, mug3|meiosis specific coiled-coil protei...    25   9.2  

>SPBC29A3.06 |||CGI-48 family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 556

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +2

Query: 341 ELEKLNAATDEINKLELELDESMKTFHLLLNE 436
           ELE  NA    IN     LD+  +TF +++NE
Sbjct: 7   ELELENAVFGNINNFSSFLDKENETFDVMMNE 38


>SPBC336.02 |||18S rRNA dimethylase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 307

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +2

Query: 317 ELDPRIQVELEKLNAATDEINKLELELDESMKT 415
           E+DPR+  E+ K    T +  KL++ L + +KT
Sbjct: 79  EMDPRMAAEITKRVQGTPKEKKLQVVLGDVIKT 111


>SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 670

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 11/48 (22%), Positives = 26/48 (54%)
 Frame = +2

Query: 329 RIQVELEKLNAATDEINKLELELDESMKTFHLLLNETSRRLQALTRRL 472
           ++  +LEK N   DE+N  +L+L + ++    + ++ +   Q L  ++
Sbjct: 489 QLNAKLEKANIVIDELNSAKLKLSKQVEEESSMKDDLTEMNQRLKEQI 536


>SPBC146.03c |cut3|smc4, smc4|condensin subunit
           Cut3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1324

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = +2

Query: 344 LEKLNAATDEINKLELELDESMKTFHLLLNETSRRLQALTR 466
           LEK+N  T E   L++ELD  +   + L+N+      +L +
Sbjct: 527 LEKINQLTSEKQILQVELDMLLNKENDLINDVESSQSSLDK 567


>SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 438

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 11/38 (28%), Positives = 24/38 (63%)
 Frame = +2

Query: 263 SAMEESSFTIPADDNGDTELDPRIQVELEKLNAATDEI 376
           + +EE++ TI +D      + P+ + + +KLN ++D+I
Sbjct: 61  NGVEEAAETIESDTKEVQNIKPKSKKKKKKLNDSSDDI 98


>SPBC106.12c |||THO complex subunit |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 274

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 15/59 (25%), Positives = 24/59 (40%)
 Frame = +2

Query: 383 LELELDESMKTFHLLLNETSRRLQALTRRLGTCVDKSRPYYDALGQAVAARSECQKAAV 559
           L+ ELDE   +FH     +S   Q  T  +    +K+ P   +    +    + Q  AV
Sbjct: 216 LDKELDEYAMSFHAASTVSSHSSQDFTPSIANAHEKNEPVAPSKDSNLTEEMDLQMEAV 274


>SPBC26H8.10 |dis3|rrp44|3'-5' exoribonuclease subunit Dis3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 970

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +2

Query: 452 QALTRRLGTCVDKSRPYYDALGQAVAARSECQKAAVQF 565
           ++L + L  CVD   PY++ L + +  R  C  +A  F
Sbjct: 749 KSLAKSLDECVDPKEPYFNTLLRILTTR--CMLSAEYF 784


>SPBC4F6.17c |||mitochondrial matrix chaperone Hsp78
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 803

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 25/87 (28%), Positives = 36/87 (41%)
 Frame = +2

Query: 332 IQVELEKLNAATDEINKLELELDESMKTFHLLLNETSRRLQALTRRLGTCVDKSRPYYDA 511
           IQ+ELE L   TD  +   +E  E +++    L E   +L A        +D  +     
Sbjct: 355 IQIELESLRKETDTTS---VERREKLESKLTDLKEEQDKLSAAWEEERKLLDSIKKAKTE 411

Query: 512 LGQAVAARSECQKAAVQFQRASELHAA 592
           L QA       Q+    + RASEL  A
Sbjct: 412 LEQARIELERTQREG-NYARASELQYA 437


>SPBC582.06c |mcp6|hrs1, mug3|meiosis specific coiled-coil protein
           Mcp6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 327

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 14/55 (25%), Positives = 26/55 (47%)
 Frame = +2

Query: 254 VIGSAMEESSFTIPADDNGDTELDPRIQVELEKLNAATDEINKLELELDESMKTF 418
           V  S  EESS    +  + +T+L   ++    ++   T E+NK++ + D     F
Sbjct: 144 VYKSKFEESSLRCKSLYSSNTKLKDSMETMKRRMETETKEMNKIKPKNDSESDRF 198


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,322,772
Number of Sequences: 5004
Number of extensions: 41832
Number of successful extensions: 132
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)