Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0051
(640 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0343 + 28566513-28566644,28566791-28568494,28569178-285692... 32 0.44
02_04_0606 + 24297392-24299241,24299424-24299484,24299626-24300087 31 1.0
12_01_0582 - 4752576-4752786,4752955-4753037,4753324-4753530,475... 30 1.3
08_01_0087 + 630355-630403,630502-630699,631858-631943,632238-63... 30 1.3
08_01_0069 - 483701-483997,484113-484325,484548-484727,484815-48... 30 1.3
02_01_0642 - 4803464-4805665,4806231-4806320 30 1.8
03_05_0432 - 24231984-24233048,24233391-24235160,24235261-242365... 29 3.1
05_07_0123 + 27847555-27847953 29 4.1
01_06_0426 + 29270744-29271064 28 5.4
11_06_0300 + 22095396-22096145,22096261-22096344,22097062-220973... 28 7.2
08_02_1384 + 26599950-26600033,26600307-26600374,26601000-266010... 28 7.2
05_04_0309 - 20100231-20100307,20100362-20100503,20100588-201009... 28 7.2
04_03_0400 - 15430809-15430832,15431199-15431231,15431355-154314... 28 7.2
01_06_1841 + 40267902-40268485,40269290-40270421 28 7.2
12_01_0618 - 5099021-5099668,5099701-5100221,5100311-5100352,510... 27 9.5
08_02_1449 - 27174451-27178005 27 9.5
08_02_1388 + 26649874-26649905,26650243-26650365,26650980-266510... 27 9.5
07_03_1615 - 28157237-28157472,28157649-28157728,28157853-281580... 27 9.5
07_01_0641 - 4790704-4790720,4790824-4791296,4791707-4792023,479... 27 9.5
02_02_0595 + 11968298-11968329,11969405-11969438,11970216-119703... 27 9.5
02_01_0435 - 3164421-3165032 27 9.5
>01_06_0343 +
28566513-28566644,28566791-28568494,28569178-28569240,
28569241-28569310,28570438-28570715,28571886-28571963,
28573017-28573715,28573811-28573913,28574096-28574196,
28574272-28574446,28574843-28575013,28575534-28575634,
28575706-28575771
Length = 1246
Score = 31.9 bits (69), Expect = 0.44
Identities = 16/75 (21%), Positives = 35/75 (46%)
Frame = +2
Query: 245 GFAVIGSAMEESSFTIPADDNGDTELDPRIQVELEKLNAATDEINKLELELDESMKTFHL 424
G ++ G +++ T+PA +N +E+ Q L+KLN ++K + +
Sbjct: 25 GESINGRKADKNRGTVPAQENLSSEMKQLAQSGLDKLNERKAYVDKERAGAESELSRARA 84
Query: 425 LLNETSRRLQALTRR 469
+ E R+++ T +
Sbjct: 85 MAKELERQIEQTTAK 99
>02_04_0606 + 24297392-24299241,24299424-24299484,24299626-24300087
Length = 790
Score = 30.7 bits (66), Expect = 1.0
Identities = 25/93 (26%), Positives = 43/93 (46%), Gaps = 3/93 (3%)
Frame = +2
Query: 350 KLNAATDEINKLELEL---DESMKTFHLLLNETSRRLQALTRRLGTCVDKSRPYYDALGQ 520
KL A DE L+ L D ++ + + + +L L R+L ++++ DA GQ
Sbjct: 247 KLRAVEDENKALKQTLAKRDAELQFVQMKYADEACKLSVLQRQLSELTEENKQLSDAHGQ 306
Query: 521 AVAARSECQKAAVQFQRASELHAAAKETVTLAE 619
+ S QF RA++L AA ++L +
Sbjct: 307 TESWASALISELEQF-RAAKLQGAAASEMSLLD 338
>12_01_0582 -
4752576-4752786,4752955-4753037,4753324-4753530,
4755128-4755207,4756853-4756998,4757088-4757719
Length = 452
Score = 30.3 bits (65), Expect = 1.3
Identities = 26/102 (25%), Positives = 48/102 (47%), Gaps = 4/102 (3%)
Frame = +2
Query: 329 RIQVELEKLNAATDEINKLELELDESMKTFHLLLNETSRRLQALTRRLGT--CVDKSRPY 502
+++ EL + DEI +L E+D+ + L +++ + LTR + +
Sbjct: 140 KLEAELRANESLRDEIVQLRGEIDKHLVVRKELSAKSASIMHELTREQSNKQQIPMLKAE 199
Query: 503 YDALGQ-AVAARSECQ-KAAVQFQRASELHAAAKETVTLAEQ 622
DAL Q V ARS C+ + FQ + A K +++A++
Sbjct: 200 IDALRQELVHARSACELEQKGNFQLVEQKKAMEKNMISMAQE 241
>08_01_0087 + 630355-630403,630502-630699,631858-631943,632238-632946,
633029-633194,633459-633934,634023-634873,635078-635987,
636597-636784
Length = 1210
Score = 30.3 bits (65), Expect = 1.3
Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Frame = +2
Query: 272 EESSFTIPA-DDNGD-TELDPRIQVELEKLNAATDEINKLELELDESMKTFHLLLN 433
E +SF +P D++ D T DPR +E + TD++N + DE F+ ++N
Sbjct: 1086 EITSFPLPEIDESHDSTRGDPREIIEESSIGVETDDMNLSDQLNDEQRSAFNKIMN 1141
>08_01_0069 -
483701-483997,484113-484325,484548-484727,484815-484985,
485655-485764,485914-485989
Length = 348
Score = 30.3 bits (65), Expect = 1.3
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Frame = +2
Query: 440 SRRLQA-LTRRLGTCVDKSRPYYDALGQAVAARSECQKAAVQFQRASELHAAA 595
SRR+++ RRL + V + YD LG AARS+ + + + LH A
Sbjct: 285 SRRIRSKAARRLDSLVTAAERIYDELGSTSAARSDQTRVTLHCSYYARLHLHA 337
>02_01_0642 - 4803464-4805665,4806231-4806320
Length = 763
Score = 29.9 bits (64), Expect = 1.8
Identities = 23/102 (22%), Positives = 50/102 (49%)
Frame = +2
Query: 317 ELDPRIQVELEKLNAATDEINKLELELDESMKTFHLLLNETSRRLQALTRRLGTCVDKSR 496
E D +I + L+ E+ KL+ ++ + + L+ +E + Q L +++
Sbjct: 191 EQDKKIASSQDLLSQKVTEVEKLKQDMLKKNEEVTLMRSEIKSKEQLLLE-----ANQAA 245
Query: 497 PYYDALGQAVAARSECQKAAVQFQRASELHAAAKETVTLAEQ 622
+A + + RSE ++ + F R++EL A ++ + +AEQ
Sbjct: 246 EQQEATIKEL--RSEIKRKEIDFSRSNELRKANEQKLKIAEQ 285
>03_05_0432 -
24231984-24233048,24233391-24235160,24235261-24236582,
24236668-24237013
Length = 1500
Score = 29.1 bits (62), Expect = 3.1
Identities = 25/104 (24%), Positives = 51/104 (49%), Gaps = 3/104 (2%)
Frame = +2
Query: 335 QVELEKLNAATDE--INKLELELDESMKTFHLLLNETSRRLQALTRRLGTCVDKSRPYYD 508
Q ELEKLN +T+E + ++ E+ + L+L + RL AL +++ V K++ D
Sbjct: 250 QAELEKLNISTEEEHLKCMQAEMAQLSLEKQLILAQDKMRLLALEKQIE--VSKAK---D 304
Query: 509 ALGQAVAARSECQKAAVQFQRAS-ELHAAAKETVTLAEQRFVSK 637
+ V E +K + + ++H+++ + L ++ K
Sbjct: 305 TETEKVMLEKELEKIQKESTSLNDQIHSSSSMIIRLQDEIITMK 348
>05_07_0123 + 27847555-27847953
Length = 132
Score = 28.7 bits (61), Expect = 4.1
Identities = 16/44 (36%), Positives = 18/44 (40%)
Frame = +1
Query: 418 PSTAERDVPPPPGTHEETRHLRRQVEAVLRCPGTGGCSTLRVSK 549
P+TA PPPP EE R E + G GC V K
Sbjct: 19 PATAAAAPPPPPPRGEEEEVRRAVAECPVVVVGRSGCCLSHVVK 62
>01_06_0426 + 29270744-29271064
Length = 106
Score = 28.3 bits (60), Expect = 5.4
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = +1
Query: 415 IPSTAERDVPPPPGTHEE 468
+P A R VPPP G+HEE
Sbjct: 14 LPPCAMRRVPPPRGSHEE 31
>11_06_0300 +
22095396-22096145,22096261-22096344,22097062-22097304,
22098535-22098702,22098895-22099008,22099378-22099890
Length = 623
Score = 27.9 bits (59), Expect = 7.2
Identities = 13/21 (61%), Positives = 15/21 (71%), Gaps = 1/21 (4%)
Frame = +1
Query: 409 EDIP-STAERDVPPPPGTHEE 468
EDIP T+ R+VPPP GT E
Sbjct: 139 EDIPVETSGREVPPPVGTFAE 159
>08_02_1384 +
26599950-26600033,26600307-26600374,26601000-26601072,
26601299-26601408,26601491-26601595,26601815-26601914,
26601989-26602165
Length = 238
Score = 27.9 bits (59), Expect = 7.2
Identities = 16/52 (30%), Positives = 24/52 (46%)
Frame = +2
Query: 311 DTELDPRIQVELEKLNAATDEINKLELELDESMKTFHLLLNETSRRLQALTR 466
D E I+ + TDE+ +L +L ES T H + ET + L + R
Sbjct: 136 DAEAQAHIEKHRKLQEDLTDEMVELARQLKESSLTMHQSVQETEKILDSTER 187
>05_04_0309 -
20100231-20100307,20100362-20100503,20100588-20100967,
20101049-20101076,20101182-20101306,20101402-20101457,
20101709-20101791,20101881-20101949,20102050-20102640
Length = 516
Score = 27.9 bits (59), Expect = 7.2
Identities = 15/34 (44%), Positives = 19/34 (55%)
Frame = +2
Query: 272 EESSFTIPADDNGDTELDPRIQVELEKLNAATDE 373
EE PA+++ + ELDP VELE L DE
Sbjct: 144 EEEQEAAPAEEDEEQELDPE-AVELEALTNEIDE 176
>04_03_0400 -
15430809-15430832,15431199-15431231,15431355-15431429,
15431524-15431805
Length = 137
Score = 27.9 bits (59), Expect = 7.2
Identities = 13/26 (50%), Positives = 14/26 (53%)
Frame = +1
Query: 457 THEETRHLRRQVEAVLRCPGTGGCST 534
TH+ RHL R V A G GG ST
Sbjct: 51 THDRNRHLSRLVAADFSLGGLGGIST 76
>01_06_1841 + 40267902-40268485,40269290-40270421
Length = 571
Score = 27.9 bits (59), Expect = 7.2
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = +1
Query: 415 IPSTAERDVPPPPGTHEETRHLRRQVEAVLRCPGTGG 525
I + A R VPP G HE TR++ + +L T G
Sbjct: 342 IQTRASRRVPPGGGIHEVTRYVMNYIRLLLHHKTTLG 378
>12_01_0618 -
5099021-5099668,5099701-5100221,5100311-5100352,
5100905-5100962
Length = 422
Score = 27.5 bits (58), Expect = 9.5
Identities = 22/85 (25%), Positives = 38/85 (44%)
Frame = +2
Query: 263 SAMEESSFTIPADDNGDTELDPRIQVELEKLNAATDEINKLELELDESMKTFHLLLNETS 442
S +E T+ + N +L + E +K N + + E + +E + T + E +
Sbjct: 316 SEVEHLRATLVEEANKIGDLKTMLVEEKDK-NEHHKTMLEEEKDKNERLNTMLVEEKEKN 374
Query: 443 RRLQALTRRLGTCVDKSRPYYDALG 517
RLQ + T + +S PY D LG
Sbjct: 375 ERLQLSLHQANTKLGQSMPYADVLG 399
>08_02_1449 - 27174451-27178005
Length = 1184
Score = 27.5 bits (58), Expect = 9.5
Identities = 15/57 (26%), Positives = 27/57 (47%)
Frame = +2
Query: 320 LDPRIQVELEKLNAATDEINKLELELDESMKTFHLLLNETSRRLQALTRRLGTCVDK 490
+ ++ L+K+N +E+NK L T H++ +T L +L +G DK
Sbjct: 118 MSKKLNSVLKKINELVEEMNKFGLVERADQATVHVIHPQTHSGLDSLMEIVGRDDDK 174
>08_02_1388 +
26649874-26649905,26650243-26650365,26650980-26651013,
26651792-26651893,26652174-26652241,26652518-26652571,
26653139-26653211,26653428-26653537,26653615-26653719,
26653842-26653941,26653979-26654088,26656234-26656306,
26656429-26656484,26656576-26656702
Length = 388
Score = 27.5 bits (58), Expect = 9.5
Identities = 23/81 (28%), Positives = 35/81 (43%), Gaps = 1/81 (1%)
Frame = +2
Query: 254 VIG-SAMEESSFTIPADDNGDTELDPRIQVELEKLNAATDEINKLELELDESMKTFHLLL 430
V+G S+ E I A D E I+ + TDE+ +L +L ES T H +
Sbjct: 203 VVGPSSHERKDRDIGAPIKLDEEAQAHIEKHRKLQEDLTDEMVELARQLKESSLTMHQSV 262
Query: 431 NETSRRLQALTRRLGTCVDKS 493
ET + +G C+ +S
Sbjct: 263 QETEKLWYV---DIGNCLGRS 280
>07_03_1615 -
28157237-28157472,28157649-28157728,28157853-28158009,
28158379-28158565,28158646-28158772,28159218-28159805,
28159898-28160443,28161579-28161620,28162081-28162145,
28162273-28162377,28162682-28162741,28163149-28163237,
28163611-28163732,28163862-28163968,28164041-28164111,
28164377-28164470,28165010-28165247,28166112-28166347
Length = 1049
Score = 27.5 bits (58), Expect = 9.5
Identities = 16/68 (23%), Positives = 33/68 (48%), Gaps = 3/68 (4%)
Frame = +2
Query: 347 EKLNAATDEINKLELELDESMKTFHLLLNETSRRLQA---LTRRLGTCVDKSRPYYDALG 517
EKL A + K+ E D ++ ++++T A + R+G +D+S ++
Sbjct: 616 EKLEAIEERSEKIMRESDHLRRSLSSIMSQTEHLATASEDVRARIGDVLDRSAAIFERSR 675
Query: 518 QAVAARSE 541
+ AA++E
Sbjct: 676 EIAAAQAE 683
>07_01_0641 -
4790704-4790720,4790824-4791296,4791707-4792023,
4792094-4792423
Length = 378
Score = 27.5 bits (58), Expect = 9.5
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +2
Query: 299 DDNGDTELDPRIQVELEKLNAATDEINKLE 388
DD D EL+P ++ + EK +D N LE
Sbjct: 320 DDEDDVELEPIVEEKFEKFEWDSDNDNVLE 349
>02_02_0595 +
11968298-11968329,11969405-11969438,11970216-11970317,
11970598-11970665,11970942-11970995,11971563-11971635,
11971852-11971961,11972039-11972143,11972266-11972365,
11972403-11972512,11974664-11974736,11974859-11974914,
11975006-11975132
Length = 347
Score = 27.5 bits (58), Expect = 9.5
Identities = 23/81 (28%), Positives = 35/81 (43%), Gaps = 1/81 (1%)
Frame = +2
Query: 254 VIG-SAMEESSFTIPADDNGDTELDPRIQVELEKLNAATDEINKLELELDESMKTFHLLL 430
V+G S+ E I A D E I+ + TDE+ +L +L ES T H +
Sbjct: 162 VVGPSSHERKDRDIGAPIKLDEEAQAHIEKHRKLQEDLTDEMVELARQLKESSLTMHQSV 221
Query: 431 NETSRRLQALTRRLGTCVDKS 493
ET + +G C+ +S
Sbjct: 222 QETEKLWYV---DIGNCLGRS 239
>02_01_0435 - 3164421-3165032
Length = 203
Score = 27.5 bits (58), Expect = 9.5
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +1
Query: 418 PSTAERDVPPPPGTHEETRHL 480
PST+ PPPP H+ +HL
Sbjct: 70 PSTSSSAPPPPPPQHQPPQHL 90
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,027,540
Number of Sequences: 37544
Number of extensions: 317211
Number of successful extensions: 1120
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1065
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1116
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1573040476
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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