Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0050
         (509 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyc...    27   1.2  
SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19 |Schizosa...    26   2.9  
SPAC3F10.06c |||initiator methionine tRNA 2'-O-ribosyl phosphate...    25   5.0  
SPBP22H7.09c |mis15||kinetochore protein Mis15 |Schizosaccharomy...    25   6.6  
SPAC19A8.04 |erg5||C-22 sterol desaturase Erg5 |Schizosaccharomy...    25   6.6  

>SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 489

 Score = 27.5 bits (58), Expect = 1.2
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = -2

Query: 469 SACWAGASMGSLRM*LKVALNGRPVLIHKNMSVPRLLPDVQK 344
           +A WA  S   L+  L+ A+N +P+   K+ S    +P +QK
Sbjct: 349 TAAWAKLSPSVLQERLRAAVNQQPLDALKSSSTQTSIPKIQK 390


>SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 639

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = -1

Query: 452 SIDGQSPHVVKSRIKWQTGAHPQ--KHVCAEVITRCPEVI 339
           SIDG   HVV+    W  G H Q  + V A ++   PEVI
Sbjct: 570 SIDGGYGHVVEDEKAW--GRHDQVPRQVFASMLNLPPEVI 607


>SPAC3F10.06c |||initiator methionine tRNA 2'-O-ribosyl phosphate
           transferase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 453

 Score = 25.4 bits (53), Expect = 5.0
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -1

Query: 497 WYV*RVHAVISMLGRSIDGQS 435
           WYV R HA IS+  +S DG +
Sbjct: 55  WYVNRRHAPISVYFKSTDGHT 75


>SPBP22H7.09c |mis15||kinetochore protein Mis15 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 409

 Score = 25.0 bits (52), Expect = 6.6
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = +3

Query: 216 ELNYFLSYQYCRSLGLQLASFETKEKADSITTYLTNAGYNK 338
           ++ Y+ +Y Y    G  L   +   K  ++TT+ TN G NK
Sbjct: 211 QMFYYTTYFYEMMSGSALRPIDLVSK--NLTTFCTNVGVNK 249


>SPAC19A8.04 |erg5||C-22 sterol desaturase Erg5 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 541

 Score = 25.0 bits (52), Expect = 6.6
 Identities = 10/25 (40%), Positives = 12/25 (48%)
 Frame = -1

Query: 470 ISMLGRSIDGQSPHVVKSRIKWQTG 396
           I  +G  +D   P   K   KWQTG
Sbjct: 59  IPFMGSFLDSMKPTFEKYNAKWQTG 83


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,121,451
Number of Sequences: 5004
Number of extensions: 42349
Number of successful extensions: 111
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 204242806
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)