Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0050
         (509 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_06_0187 + 21433842-21433887,21434504-21435246,21435437-214354...    30   1.2  
01_05_0208 - 19291953-19292552,19293027-19293134,19293231-192933...    27   8.8  

>09_06_0187 +
           21433842-21433887,21434504-21435246,21435437-21435484,
           21435929-21436814,21436967-21437056,21437543-21438417
          Length = 895

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = +3

Query: 186 FISRMNPYSPELNYFLSYQYCR 251
           FI R+  +SP++ YF SY+Y R
Sbjct: 190 FIGRLPEWSPDVRYFTSYEYPR 211


>01_05_0208 -
           19291953-19292552,19293027-19293134,19293231-19293344,
           19293464-19293573,19293720-19293808,19293942-19294138,
           19294241-19294402,19294501-19294619,19294739-19294826,
           19294911-19295016,19295157-19295245,19295351-19295503,
           19295631-19295723,19295823-19295889,19296217-19296329,
           19296453-19296548,19297963-19298139
          Length = 826

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = +3

Query: 270 ASFETKEKADSITTYLTNAGYNKYDFWTSGNNLG 371
           A+FE     D++   L   G NK   W +GNNLG
Sbjct: 628 ATFEAPSGEDAVVVDLL--GLNKGVAWVNGNNLG 659


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,263,094
Number of Sequences: 37544
Number of extensions: 290799
Number of successful extensions: 663
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 656
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 663
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1095026320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)