Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0050
         (509 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80836-14|AAB37896.1|  185|Caenorhabditis elegans Hypothetical p...    33   0.091
Z70037-4|CAA93877.1|  146|Caenorhabditis elegans Hypothetical pr...    31   0.37 
Z74030-4|CAA98436.1|  113|Caenorhabditis elegans Hypothetical pr...    31   0.49 
AF040651-4|AAB95014.1|  234|Caenorhabditis elegans Hypothetical ...    29   1.5  
Z93377-3|CAB07580.1|  358|Caenorhabditis elegans Hypothetical pr...    29   2.0  
Z22179-5|CAA80162.2|  786|Caenorhabditis elegans Hypothetical pr...    29   2.0  
AL023851-1|CAA19554.1|  149|Caenorhabditis elegans Hypothetical ...    29   2.6  
Z81478-2|CAB03933.1|  195|Caenorhabditis elegans Hypothetical pr...    28   4.5  
AL031627-7|CAA20959.2|  200|Caenorhabditis elegans Hypothetical ...    28   4.5  
Z78019-8|CAJ85784.2|  195|Caenorhabditis elegans Hypothetical pr...    27   6.0  
AL023851-2|CAA19555.2|  209|Caenorhabditis elegans Hypothetical ...    27   6.0  
Z78017-2|CAD44160.1|  615|Caenorhabditis elegans Hypothetical pr...    27   7.9  
Z73976-10|CAD44151.1|  615|Caenorhabditis elegans Hypothetical p...    27   7.9  

>U80836-14|AAB37896.1|  185|Caenorhabditis elegans Hypothetical
           protein B0432.12 protein.
          Length = 185

 Score = 33.5 bits (73), Expect = 0.091
 Identities = 21/88 (23%), Positives = 39/88 (44%), Gaps = 1/88 (1%)
 Frame = +3

Query: 111 VLLAASLGPAAAQRITT-IQLDGVQYFISRMNPYSPELNYFLSYQYCRSLGLQLASFETK 287
           +LL  S G  A   + T ++ +G+  F      Y  ++N+  + ++C   G  LA   ++
Sbjct: 8   LLLWISTGSTAPAGVATYLRSNGIVAFHKL---YHLKMNFPRAKKHCEQNGAHLAGITSR 64

Query: 288 EKADSITTYLTNAGYNKYDFWTSGNNLG 371
           E+A  +      AG +   +W  G   G
Sbjct: 65  EEAQKLIDLANEAGESNEQYWLGGQRKG 92


>Z70037-4|CAA93877.1|  146|Caenorhabditis elegans Hypothetical
           protein T27D12.3 protein.
          Length = 146

 Score = 31.5 bits (68), Expect = 0.37
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = +3

Query: 318 TNAGYNKYDFWTSGNNLGTDMFLWMSTGLPFNATFN 425
           T    N ++ WT G+  GTD F+W  TG P N  +N
Sbjct: 110 TCTALNSFE-WTDGSTTGTDGFIW-KTGDPNNYLYN 143


>Z74030-4|CAA98436.1|  113|Caenorhabditis elegans Hypothetical
           protein D1054.7 protein.
          Length = 113

 Score = 31.1 bits (67), Expect = 0.49
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = +3

Query: 348 WTSGNNLGTDMFLWMSTGLPFNAT 419
           WT G+  GTD F+W  TG P NA+
Sbjct: 57  WTDGSTTGTDGFIW-ETGEPNNAS 79


>AF040651-4|AAB95014.1|  234|Caenorhabditis elegans Hypothetical
           protein W04H10.4 protein.
          Length = 234

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +3

Query: 318 TNAGYNKYDFWTSGNNLGTDMFLWMSTGLPFNATFN 425
           T    N ++ WT G+  GTD F+W   G P N  +N
Sbjct: 168 TCTALNSFE-WTDGSTTGTDGFIW-KAGDPNNYQYN 201


>Z93377-3|CAB07580.1|  358|Caenorhabditis elegans Hypothetical
           protein F13A7.7 protein.
          Length = 358

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
 Frame = +3

Query: 207 YSPELNYFLSYQYCRSLGLQ-LASFETKEKADSITTYLTNAGYNKYDFWTSG 359
           Y P L+Y  S    R+  +  LASF ++   DS  T+  N G ++ + W  G
Sbjct: 243 YIPNLSYSNSTSSSRASSVDSLASFNSQSSTDSQNTFRKNGGRDQLE-WKQG 293


>Z22179-5|CAA80162.2|  786|Caenorhabditis elegans Hypothetical
           protein F58A4.5 protein.
          Length = 786

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 23/73 (31%), Positives = 34/73 (46%), Gaps = 4/73 (5%)
 Frame = +3

Query: 207 YSPELNYFLSYQYCRSLGLQLASFETKEKADSITTYLTNAGY---NKYDFWTSGNNLGTD 377
           Y+   ++  + +YC SLG QLA    K   D  + Y  NA     N   FW   +NL  +
Sbjct: 49  YNTPKSFQAARRYCVSLGGQLAD---KINKDDSSLYSANADLEVANSTKFWVGASNLKCN 105

Query: 378 MFLWMSTG-LPFN 413
           +  W + G + FN
Sbjct: 106 I-AWENGGEIEFN 117


>AL023851-1|CAA19554.1|  149|Caenorhabditis elegans Hypothetical
           protein Y68A4B.1 protein.
          Length = 149

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = +3

Query: 348 WTSGNNLGTDMFLWMSTGLPFNATFNY 428
           WT G+  GTD FLW + G P N    Y
Sbjct: 87  WTDGSTTGTDGFLWRN-GDPNNGGIYY 112


>Z81478-2|CAB03933.1|  195|Caenorhabditis elegans Hypothetical
           protein C31G12.2 protein.
          Length = 195

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +3

Query: 348 WTSGNNLGTDMFLWMSTGLPFNA 416
           WT G+  GTD ++W S G P NA
Sbjct: 138 WTDGSTTGTDGWIWRS-GEPNNA 159


>AL031627-7|CAA20959.2|  200|Caenorhabditis elegans Hypothetical
           protein Y102A5C.16 protein.
          Length = 200

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +3

Query: 348 WTSGNNLGTDMFLWMSTGLPFNATFN 425
           WT G+  G+D F+W     P N + N
Sbjct: 143 WTDGSATGSDAFIWNVATEPNNGSLN 168


>Z78019-8|CAJ85784.2|  195|Caenorhabditis elegans Hypothetical
           protein ZK863.9 protein.
          Length = 195

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = +3

Query: 240 QYCRSLGLQLASFETKEKADSI 305
           Q C  LG  LASFET ++A S+
Sbjct: 83  QECVELGAHLASFETTDEATSV 104


>AL023851-2|CAA19555.2|  209|Caenorhabditis elegans Hypothetical
           protein Y68A4B.2 protein.
          Length = 209

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 13/27 (48%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
 Frame = +3

Query: 348 WTSGNNLGTDMFLW-MSTGLPFNATFN 425
           WT G+  GTD F W +S G P N   N
Sbjct: 132 WTDGSATGTDGFNWRLSDGEPNNLFLN 158


>Z78017-2|CAD44160.1|  615|Caenorhabditis elegans Hypothetical
           protein T07C12.12 protein.
          Length = 615

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = +3

Query: 213 PELNYFLSY-QYCRSLGLQLASFETKEKADSITTYLTN 323
           P+LN F+   QY R LG++  +   K+K +  TT  +N
Sbjct: 198 PQLNSFVPVDQYARLLGIKSLNLSAKKKEEVKTTMNSN 235


>Z73976-10|CAD44151.1|  615|Caenorhabditis elegans Hypothetical
           protein T07C12.12 protein.
          Length = 615

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = +3

Query: 213 PELNYFLSY-QYCRSLGLQLASFETKEKADSITTYLTN 323
           P+LN F+   QY R LG++  +   K+K +  TT  +N
Sbjct: 198 PQLNSFVPVDQYARLLGIKSLNLSAKKKEEVKTTMNSN 235


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,019,682
Number of Sequences: 27780
Number of extensions: 251521
Number of successful extensions: 631
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 615
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 631
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 988489374
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)