Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0050
         (509 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    22   4.2  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    22   4.2  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    22   4.2  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    21   5.6  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     21   5.6  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    21   7.4  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          21   7.4  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   7.4  

>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 21.8 bits (44), Expect = 4.2
 Identities = 6/16 (37%), Positives = 11/16 (68%)
 Frame = +3

Query: 183 YFISRMNPYSPELNYF 230
           Y++ +  P  P+LNY+
Sbjct: 182 YYLHQFAPEQPDLNYY 197


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 21.8 bits (44), Expect = 4.2
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -1

Query: 449 IDGQSPHVVKSRIKWQTGA 393
           I+  S H  K R++W TGA
Sbjct: 134 IESFSYHKQKLRLRWGTGA 152


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 21.8 bits (44), Expect = 4.2
 Identities = 6/16 (37%), Positives = 11/16 (68%)
 Frame = +3

Query: 183 YFISRMNPYSPELNYF 230
           Y++ +  P  P+LNY+
Sbjct: 182 YYLHQFAPEQPDLNYY 197


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.4 bits (43), Expect = 5.6
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -2

Query: 409 NGRPVLIHKNMSVPRLLPDVQ 347
           NGR   I + M+  RLLP V+
Sbjct: 28  NGREDQIPREMNTERLLPYVE 48


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 21.4 bits (43), Expect = 5.6
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -2

Query: 409 NGRPVLIHKNMSVPRLLPDVQ 347
           NGR   I + M+  RLLP V+
Sbjct: 28  NGREDQIPREMNTERLLPYVE 48


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 21.0 bits (42), Expect = 7.4
 Identities = 10/35 (28%), Positives = 18/35 (51%)
 Frame = +2

Query: 215 RAQLFPVLSVLQIIRSSTGIVRDEGEGRFDNDLSN 319
           ++ L P L+  Q  +++TG+ R       DN  +N
Sbjct: 337 KSTLTPKLARKQFQKNTTGLERSRSWSSLDNTNTN 371


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 21.0 bits (42), Expect = 7.4
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +3

Query: 288 EKADSITTYLTNAGYNKYDFWTSGNN 365
           E+  ++T + T   Y+KYD   + NN
Sbjct: 102 EQRCTVTMHGTVQSYDKYDLLENVNN 127


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 21.0 bits (42), Expect = 7.4
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +3

Query: 396 TGLPFNATFNYMR 434
           TGLPF  TFN ++
Sbjct: 932 TGLPFVYTFNVIK 944


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 143,621
Number of Sequences: 438
Number of extensions: 3103
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14109465
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)