Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0049
         (517 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock prote...    23   1.6  
U14732-1|AAC46491.1|  322|Tribolium castaneum fushi-tarazu protein.    22   3.7  
AY043292-2|AAK96032.1|  290|Tribolium castaneum homeodomain tran...    22   3.7  
AF321227-1|AAK16421.1|  290|Tribolium castaneum Ftz protein.           22   3.7  

>EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock protein
           90 protein.
          Length = 721

 Score = 23.0 bits (47), Expect = 1.6
 Identities = 15/63 (23%), Positives = 34/63 (53%), Gaps = 4/63 (6%)
 Frame = +3

Query: 180 PSAEDVATEKTQKSLFDGIEKFDSSQLKHTETQEKN---PLPDKDAIE-AEKEKNKFLNG 347
           P  EDV  ++ + +  +  +K  + + K+TE +E N   P+  ++A + +++E  +F   
Sbjct: 245 PKIEDVGEDEDEDTKKEDKKKKKTIKEKYTEDEELNKTKPIWTRNADDISQEEYGEFYKS 304

Query: 348 IEN 356
           + N
Sbjct: 305 LTN 307


>U14732-1|AAC46491.1|  322|Tribolium castaneum fushi-tarazu protein.
          Length = 322

 Score = 21.8 bits (44), Expect = 3.7
 Identities = 9/38 (23%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
 Frame = -2

Query: 249 NQTSRYRRIKTSG-SSQWQRLQQTEAQSFHWCRRHGDS 139
           NQ   +++   +  S++   + +  A  + W + HGDS
Sbjct: 141 NQYENFQQYDNNNFSAEENSVSEPPANFYPWMKAHGDS 178


>AY043292-2|AAK96032.1|  290|Tribolium castaneum homeodomain
           transcription factor Fushitarazu protein.
          Length = 290

 Score = 21.8 bits (44), Expect = 3.7
 Identities = 9/38 (23%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
 Frame = -2

Query: 249 NQTSRYRRIKTSG-SSQWQRLQQTEAQSFHWCRRHGDS 139
           NQ   +++   +  S++   + +  A  + W + HGDS
Sbjct: 141 NQYENFQQYDNNNFSAEENSVSEPPANFYPWMKAHGDS 178


>AF321227-1|AAK16421.1|  290|Tribolium castaneum Ftz protein.
          Length = 290

 Score = 21.8 bits (44), Expect = 3.7
 Identities = 9/38 (23%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
 Frame = -2

Query: 249 NQTSRYRRIKTSG-SSQWQRLQQTEAQSFHWCRRHGDS 139
           NQ   +++   +  S++   + +  A  + W + HGDS
Sbjct: 141 NQYENFQQYDNNNFSAEENSVSEPPANFYPWMKAHGDS 178


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 104,175
Number of Sequences: 336
Number of extensions: 2148
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12363686
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)