Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0049
(517 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF026213-7|AAB71308.2| 151|Caenorhabditis elegans Tetra thymosi... 84 7e-17
AL110471-2|CAB63306.1| 479|Caenorhabditis elegans Hypothetical ... 31 0.65
AF039040-2|AAO91670.1| 615|Caenorhabditis elegans Hypothetical ... 30 1.1
AF039040-1|AAB94184.1| 553|Caenorhabditis elegans Hypothetical ... 30 1.1
AC006684-10|AAF39962.2| 665|Caenorhabditis elegans Hypothetical... 29 1.5
Z81562-9|CAN99693.1| 1376|Caenorhabditis elegans Hypothetical pr... 29 2.0
Z81562-8|CAN99692.1| 1817|Caenorhabditis elegans Hypothetical pr... 29 2.0
Z81474-10|CAN99685.1| 1376|Caenorhabditis elegans Hypothetical p... 29 2.0
Z81474-9|CAN99684.1| 1817|Caenorhabditis elegans Hypothetical pr... 29 2.0
U42841-12|AAC48169.2| 1030|Caenorhabditis elegans Gex interactin... 29 2.0
Z83113-10|CAI46598.1| 556|Caenorhabditis elegans Hypothetical p... 28 3.4
Z83113-9|CAB05548.2| 497|Caenorhabditis elegans Hypothetical pr... 28 3.4
Z73975-5|CAA98278.2| 556|Caenorhabditis elegans Hypothetical pr... 28 3.4
Z73975-4|CAA98279.2| 497|Caenorhabditis elegans Hypothetical pr... 28 3.4
Z48009-5|CAA88086.1| 329|Caenorhabditis elegans Hypothetical pr... 28 3.4
Z46343-6|CAL36520.1| 366|Caenorhabditis elegans Hypothetical pr... 28 3.4
Z46343-5|CAA86458.2| 356|Caenorhabditis elegans Hypothetical pr... 28 3.4
U41994-6|AAK31526.1| 1286|Caenorhabditis elegans Hypothetical pr... 28 3.4
U29488-3|AAA68772.1| 221|Caenorhabditis elegans Hypothetical pr... 28 3.4
AF022981-2|AAG24200.1| 236|Caenorhabditis elegans Hypothetical ... 28 3.4
Z78540-4|CAB01734.2| 624|Caenorhabditis elegans Hypothetical pr... 28 4.6
U53154-11|AAC25848.1| 390|Caenorhabditis elegans Hypothetical p... 28 4.6
AL034393-13|CAA22317.1| 340|Caenorhabditis elegans Hypothetical... 27 6.0
Z81486-7|CAB03989.1| 480|Caenorhabditis elegans Hypothetical pr... 27 8.0
U00040-2|AAA50667.4| 366|Caenorhabditis elegans Hypothetical pr... 27 8.0
AL110478-6|CAE17957.2| 952|Caenorhabditis elegans Hypothetical ... 27 8.0
AL031627-24|CAA20943.2| 168|Caenorhabditis elegans Hypothetical... 27 8.0
AF067216-1|AAC17524.1| 301|Caenorhabditis elegans Hypothetical ... 27 8.0
AF040645-7|AAB94977.2| 304|Caenorhabditis elegans Hypothetical ... 27 8.0
>AF026213-7|AAB71308.2| 151|Caenorhabditis elegans Tetra thymosin
(four thymosin repeatprotein) protein 1 protein.
Length = 151
Score = 83.8 bits (198), Expect = 7e-17
Identities = 50/123 (40%), Positives = 70/123 (56%), Gaps = 1/123 (0%)
Frame = +3
Query: 75 SLKDLPKVATDLKSQL-EGFNTSCLRDVDTNEKIVLPSAEDVATEKTQKSLFDGIEKFDS 251
++ +LPK+ +L + EG L+ V+T EK VLP+ EDVA EK IE FDS
Sbjct: 3 AVTELPKMNQELAGAVREGLE---LKKVETTEKNVLPTKEDVAEEKQHVERIHEIEHFDS 59
Query: 252 SQLKHTETQEKNPLPDKDAIEAEKEKNKFLNGIENFDPTKLKHTETCEKNPLPTKDVIEQ 431
++L T +EK LP D I+ EK+ + + I NF LK TET EKN LP+ + +
Sbjct: 60 TKLHSTPVKEKIVLPSADDIKQEKQHLELTDKINNFPSENLKKTETIEKNVLPSPTDVAR 119
Query: 432 EKS 440
EK+
Sbjct: 120 EKT 122
>AL110471-2|CAB63306.1| 479|Caenorhabditis elegans Hypothetical
protein T06D10.2 protein.
Length = 479
Score = 30.7 bits (66), Expect = 0.65
Identities = 21/92 (22%), Positives = 42/92 (45%), Gaps = 1/92 (1%)
Frame = +3
Query: 165 EKIVLPSAEDVATEKTQKSLFDG-IEKFDSSQLKHTETQEKNPLPDKDAIEAEKEKNKFL 341
EK L + + EK +K D +E+ + K E +EK +++ ++ ++E+NK
Sbjct: 120 EKDKLAEEKRLDKEKKEKERLDKKLEEDKKKEEKRKEAEEKKKKDEEEKMKKDEERNKRK 179
Query: 342 NGIENFDPTKLKHTETCEKNPLPTKDVIEQEK 437
E K + E ++ ++ IE+ K
Sbjct: 180 KEEEEKKEAKRREDEEKKEAKRKEEEAIEERK 211
>AF039040-2|AAO91670.1| 615|Caenorhabditis elegans Hypothetical
protein T22B11.4b protein.
Length = 615
Score = 29.9 bits (64), Expect = 1.1
Identities = 23/92 (25%), Positives = 44/92 (47%), Gaps = 1/92 (1%)
Frame = +3
Query: 186 AEDVATEKTQKSLFDGIEKFDSSQLKHTETQEKNPLPDKDAIEAEKEKNKFLN-GIENFD 362
AE+ AT Q +G ++ E +EK + E+ +E++ L +E+ +
Sbjct: 310 AEETATV-VQVDKDEGDVSEETGGTNFFEEEEKKEEGETKKEESSEEEDGVLKVNLEDIE 368
Query: 363 PTKLKHTETCEKNPLPTKDVIEQEKSX*TTTL 458
PTKLK E +K ++ ++E++ TT +
Sbjct: 369 PTKLKSQEDAKKKEGDEEEEKDEEEAETTTVV 400
>AF039040-1|AAB94184.1| 553|Caenorhabditis elegans Hypothetical
protein T22B11.4a protein.
Length = 553
Score = 29.9 bits (64), Expect = 1.1
Identities = 23/92 (25%), Positives = 44/92 (47%), Gaps = 1/92 (1%)
Frame = +3
Query: 186 AEDVATEKTQKSLFDGIEKFDSSQLKHTETQEKNPLPDKDAIEAEKEKNKFLN-GIENFD 362
AE+ AT Q +G ++ E +EK + E+ +E++ L +E+ +
Sbjct: 310 AEETATV-VQVDKDEGDVSEETGGTNFFEEEEKKEEGETKKEESSEEEDGVLKVNLEDIE 368
Query: 363 PTKLKHTETCEKNPLPTKDVIEQEKSX*TTTL 458
PTKLK E +K ++ ++E++ TT +
Sbjct: 369 PTKLKSQEDAKKKEGDEEEEKDEEEAETTTVV 400
>AC006684-10|AAF39962.2| 665|Caenorhabditis elegans Hypothetical
protein T02H6.2 protein.
Length = 665
Score = 29.5 bits (63), Expect = 1.5
Identities = 24/83 (28%), Positives = 36/83 (43%)
Frame = +3
Query: 189 EDVATEKTQKSLFDGIEKFDSSQLKHTETQEKNPLPDKDAIEAEKEKNKFLNGIENFDPT 368
E A +K ++SL K DSS++K ++T NP D I +++ + + F
Sbjct: 537 EAEARKKVEESLK---RKLDSSKVKPSQTSSPNPY--TDTILSDEHLTQLARDLSKFKSN 591
Query: 369 KLKHTETCEKNPLPTKDVIEQEK 437
K C LP DV EK
Sbjct: 592 LAK----CFGTKLPADDVTSDEK 610
>Z81562-9|CAN99693.1| 1376|Caenorhabditis elegans Hypothetical protein
C18D4.2b protein.
Length = 1376
Score = 29.1 bits (62), Expect = 2.0
Identities = 19/75 (25%), Positives = 27/75 (36%)
Frame = +3
Query: 177 LPSAEDVATEKTQKSLFDGIEKFDSSQLKHTETQEKNPLPDKDAIEAEKEKNKFLNGIEN 356
LPS D T +K FD+ LK + L D + L+ +N
Sbjct: 1094 LPSTSDEKTPTNRKRSESSESSFDNFMLKLAIKTSLSDLKDDSLTNGASPEVDLLSTSDN 1153
Query: 357 FDPTKLKHTETCEKN 401
PT K ++ E N
Sbjct: 1154 KTPTNRKRSQVSESN 1168
>Z81562-8|CAN99692.1| 1817|Caenorhabditis elegans Hypothetical protein
C18D4.2a protein.
Length = 1817
Score = 29.1 bits (62), Expect = 2.0
Identities = 19/75 (25%), Positives = 27/75 (36%)
Frame = +3
Query: 177 LPSAEDVATEKTQKSLFDGIEKFDSSQLKHTETQEKNPLPDKDAIEAEKEKNKFLNGIEN 356
LPS D T +K FD+ LK + L D + L+ +N
Sbjct: 1094 LPSTSDEKTPTNRKRSESSESSFDNFMLKLAIKTSLSDLKDDSLTNGASPEVDLLSTSDN 1153
Query: 357 FDPTKLKHTETCEKN 401
PT K ++ E N
Sbjct: 1154 KTPTNRKRSQVSESN 1168
>Z81474-10|CAN99685.1| 1376|Caenorhabditis elegans Hypothetical
protein C18D4.2b protein.
Length = 1376
Score = 29.1 bits (62), Expect = 2.0
Identities = 19/75 (25%), Positives = 27/75 (36%)
Frame = +3
Query: 177 LPSAEDVATEKTQKSLFDGIEKFDSSQLKHTETQEKNPLPDKDAIEAEKEKNKFLNGIEN 356
LPS D T +K FD+ LK + L D + L+ +N
Sbjct: 1094 LPSTSDEKTPTNRKRSESSESSFDNFMLKLAIKTSLSDLKDDSLTNGASPEVDLLSTSDN 1153
Query: 357 FDPTKLKHTETCEKN 401
PT K ++ E N
Sbjct: 1154 KTPTNRKRSQVSESN 1168
>Z81474-9|CAN99684.1| 1817|Caenorhabditis elegans Hypothetical protein
C18D4.2a protein.
Length = 1817
Score = 29.1 bits (62), Expect = 2.0
Identities = 19/75 (25%), Positives = 27/75 (36%)
Frame = +3
Query: 177 LPSAEDVATEKTQKSLFDGIEKFDSSQLKHTETQEKNPLPDKDAIEAEKEKNKFLNGIEN 356
LPS D T +K FD+ LK + L D + L+ +N
Sbjct: 1094 LPSTSDEKTPTNRKRSESSESSFDNFMLKLAIKTSLSDLKDDSLTNGASPEVDLLSTSDN 1153
Query: 357 FDPTKLKHTETCEKN 401
PT K ++ E N
Sbjct: 1154 KTPTNRKRSQVSESN 1168
>U42841-12|AAC48169.2| 1030|Caenorhabditis elegans Gex interacting
protein protein16, isoform d protein.
Length = 1030
Score = 29.1 bits (62), Expect = 2.0
Identities = 15/46 (32%), Positives = 22/46 (47%)
Frame = +2
Query: 317 GEGKEQIPERHRELRSH*AEAHGDVRKEPAPHKGRH*AREIXLNHY 454
G+ + Q P+ + RS + GD+ P P A EI L+HY
Sbjct: 320 GQNQPQQPQYQQHPRSQSVDPSGDMNGGPRPIHQNFSASEIELHHY 365
>Z83113-10|CAI46598.1| 556|Caenorhabditis elegans Hypothetical
protein K08H10.2b protein.
Length = 556
Score = 28.3 bits (60), Expect = 3.4
Identities = 12/51 (23%), Positives = 22/51 (43%)
Frame = -2
Query: 294 EAGSSPESRCASAGSNQTSRYRRIKTSGSSQWQRLQQTEAQSFHWCRRHGD 142
EA S +S + AG Y K S W+ ++ ++++ +H D
Sbjct: 51 EASDSTKSLTSDAGDAILGAYDAAKEKASDAWESTKEMVSEAYEQAEKHAD 101
>Z83113-9|CAB05548.2| 497|Caenorhabditis elegans Hypothetical
protein K08H10.2a protein.
Length = 497
Score = 28.3 bits (60), Expect = 3.4
Identities = 12/51 (23%), Positives = 22/51 (43%)
Frame = -2
Query: 294 EAGSSPESRCASAGSNQTSRYRRIKTSGSSQWQRLQQTEAQSFHWCRRHGD 142
EA S +S + AG Y K S W+ ++ ++++ +H D
Sbjct: 51 EASDSTKSLTSDAGDAILGAYDAAKEKASDAWESTKEMVSEAYEQAEKHAD 101
>Z73975-5|CAA98278.2| 556|Caenorhabditis elegans Hypothetical
protein K08H10.2b protein.
Length = 556
Score = 28.3 bits (60), Expect = 3.4
Identities = 12/51 (23%), Positives = 22/51 (43%)
Frame = -2
Query: 294 EAGSSPESRCASAGSNQTSRYRRIKTSGSSQWQRLQQTEAQSFHWCRRHGD 142
EA S +S + AG Y K S W+ ++ ++++ +H D
Sbjct: 51 EASDSTKSLTSDAGDAILGAYDAAKEKASDAWESTKEMVSEAYEQAEKHAD 101
>Z73975-4|CAA98279.2| 497|Caenorhabditis elegans Hypothetical
protein K08H10.2a protein.
Length = 497
Score = 28.3 bits (60), Expect = 3.4
Identities = 12/51 (23%), Positives = 22/51 (43%)
Frame = -2
Query: 294 EAGSSPESRCASAGSNQTSRYRRIKTSGSSQWQRLQQTEAQSFHWCRRHGD 142
EA S +S + AG Y K S W+ ++ ++++ +H D
Sbjct: 51 EASDSTKSLTSDAGDAILGAYDAAKEKASDAWESTKEMVSEAYEQAEKHAD 101
>Z48009-5|CAA88086.1| 329|Caenorhabditis elegans Hypothetical
protein AH6.7 protein.
Length = 329
Score = 28.3 bits (60), Expect = 3.4
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = -3
Query: 209 LLSGNVFSRRKHNLFIGVDVTETAGVEAFEL 117
LL N+FS H +F+G+ + E + F+L
Sbjct: 58 LLYQNLFSANIHQIFLGITIVERLNIAFFKL 88
>Z46343-6|CAL36520.1| 366|Caenorhabditis elegans Hypothetical
protein T23F11.3b protein.
Length = 366
Score = 28.3 bits (60), Expect = 3.4
Identities = 13/39 (33%), Positives = 23/39 (58%)
Frame = -2
Query: 306 RLCPEAGSSPESRCASAGSNQTSRYRRIKTSGSSQWQRL 190
R P++GSS E+ + + + S R + TS SSQ+ ++
Sbjct: 73 RSLPKSGSSSEATSSKSSDSLVSFTRNVSTSTSSQYGKI 111
>Z46343-5|CAA86458.2| 356|Caenorhabditis elegans Hypothetical
protein T23F11.3a protein.
Length = 356
Score = 28.3 bits (60), Expect = 3.4
Identities = 13/39 (33%), Positives = 23/39 (58%)
Frame = -2
Query: 306 RLCPEAGSSPESRCASAGSNQTSRYRRIKTSGSSQWQRL 190
R P++GSS E+ + + + S R + TS SSQ+ ++
Sbjct: 73 RSLPKSGSSSEATSSKSSDSLVSFTRNVSTSTSSQYGKI 111
>U41994-6|AAK31526.1| 1286|Caenorhabditis elegans Hypothetical
protein F59A6.5 protein.
Length = 1286
Score = 28.3 bits (60), Expect = 3.4
Identities = 20/93 (21%), Positives = 48/93 (51%), Gaps = 1/93 (1%)
Frame = +3
Query: 147 RDVDTNEKIVLPSAEDVATEKTQKSLFDGIEK-FDSSQLKHTETQEKNPLPDKDAIEAEK 323
R++ + ++ E + KT+ F+ I+K +S++ + + TQEK K I A++
Sbjct: 387 RELQSLTSLMAERDEQIEELKTKMFSFEMIKKDHESAKNELSRTQEKLDQMGKHLIMADQ 446
Query: 324 EKNKFLNGIENFDPTKLKHTETCEKNPLPTKDV 422
+ + F + E+ + ++ + E C + + +D+
Sbjct: 447 QCSTFKSLKESAEGSRRRAIEQCNEMVVRIRDL 479
>U29488-3|AAA68772.1| 221|Caenorhabditis elegans Hypothetical
protein C56C10.4 protein.
Length = 221
Score = 28.3 bits (60), Expect = 3.4
Identities = 17/52 (32%), Positives = 21/52 (40%)
Frame = -2
Query: 357 SSRCRSGICSFPSPLR*RLCPEAGSSPESRCASAGSNQTSRYRRIKTSGSSQ 202
S C G C P P C AG P C S G +T R+ +G+ Q
Sbjct: 25 SGTCGLGPCFNPLPALPSPCASAGCGPGFSCGSYGCYRTK--ARVHAAGTHQ 74
>AF022981-2|AAG24200.1| 236|Caenorhabditis elegans Hypothetical
protein W03F9.2a protein.
Length = 236
Score = 28.3 bits (60), Expect = 3.4
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Frame = +3
Query: 261 KHTETQEKNPLPDKDAIEAEKEKNKFLNGIE--NFD 362
KHTET+++ P +K A+K N L +E N+D
Sbjct: 192 KHTETEKEAPPQEKSVTNAQKPGNPALLSLESRNYD 227
>Z78540-4|CAB01734.2| 624|Caenorhabditis elegans Hypothetical
protein C33G3.6 protein.
Length = 624
Score = 27.9 bits (59), Expect = 4.6
Identities = 15/62 (24%), Positives = 28/62 (45%)
Frame = +3
Query: 234 IEKFDSSQLKHTETQEKNPLPDKDAIEAEKEKNKFLNGIENFDPTKLKHTETCEKNPLPT 413
IE+F K T ++N ++ E++ E+ +LN I +F + H LP+
Sbjct: 98 IEQFFGENQKSTRNSDQNAKNHEEDPESDDEETAYLNLIRSFKKEESMHDLKNASGKLPS 157
Query: 414 KD 419
+
Sbjct: 158 SN 159
>U53154-11|AAC25848.1| 390|Caenorhabditis elegans Hypothetical
protein C33G8.2 protein.
Length = 390
Score = 27.9 bits (59), Expect = 4.6
Identities = 25/91 (27%), Positives = 34/91 (37%)
Frame = +3
Query: 63 SDTPSLKDLPKVATDLKSQLEGFNTSCLRDVDTNEKIVLPSAEDVATEKTQKSLFDGIEK 242
SD+ K K D K Q E + D +K +D E+ K D EK
Sbjct: 113 SDSSEDKKKRKQMRDKKKQEEEDKKKEEEEKDKKKKDKKKEEDDEEEEQKDKKKKD--EK 170
Query: 243 FDSSQLKHTETQEKNPLPDKDAIEAEKEKNK 335
D + + +K D D E EK+K K
Sbjct: 171 NDDDDEEDKKKDKKKKKDDNDEEEKEKDKKK 201
>AL034393-13|CAA22317.1| 340|Caenorhabditis elegans Hypothetical
protein Y18D10A.17 protein.
Length = 340
Score = 27.5 bits (58), Expect = 6.0
Identities = 24/75 (32%), Positives = 34/75 (45%), Gaps = 2/75 (2%)
Frame = +3
Query: 126 GFNTSCLRDVDTNEKIVLPSAEDV--ATEKTQKSLFDGIEKFDSSQLKHTETQEKNPLPD 299
G N + V+ EK+ S D A EK Q+ L D +EK + E +EK
Sbjct: 169 GHNNYGVPRVNHREKLKFESDFDFEKANEKFQEVLVDNLEKLNIEDKAEPEVEEK----- 223
Query: 300 KDAIEAEKEKNKFLN 344
KDA +K+ + F N
Sbjct: 224 KDAAFYDKKTSFFDN 238
>Z81486-7|CAB03989.1| 480|Caenorhabditis elegans Hypothetical
protein C53A5.9 protein.
Length = 480
Score = 27.1 bits (57), Expect = 8.0
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +3
Query: 306 AIEAEKEKNKFLNGIENFDPTKLKHTETCEKNPLP 410
AI E++ L+ IE FDP KLK + K +P
Sbjct: 427 AIRGYDEESALLDQIERFDPKKLKWSIVPSKPHVP 461
>U00040-2|AAA50667.4| 366|Caenorhabditis elegans Hypothetical
protein C18H2.2 protein.
Length = 366
Score = 27.1 bits (57), Expect = 8.0
Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
Frame = +3
Query: 162 NEKIVLPSAEDVATEKTQKSLFDGIEKFDSSQLKHTETQEKNPLPD---KDAIEAEKEKN 332
NE L +++D ++ + FD SS K T+T+ +P PD K I +EK +
Sbjct: 214 NENSALVTSKDDELFESSMTSFDTSTHSRSSGRKRTQTRPYSPTPDSVSKPLIPSEKSLH 273
Query: 333 KF 338
F
Sbjct: 274 FF 275
>AL110478-6|CAE17957.2| 952|Caenorhabditis elegans Hypothetical
protein Y26D4A.14 protein.
Length = 952
Score = 27.1 bits (57), Expect = 8.0
Identities = 19/87 (21%), Positives = 38/87 (43%), Gaps = 6/87 (6%)
Frame = +3
Query: 177 LPSAEDVATEKTQKSLFDGIEKFDSSQ-LKHTETQEKNPLPD-----KDAIEAEKEKNKF 338
L + T +T++ +F + D + LK + + P P ++ ++ K +F
Sbjct: 309 LKRENNTPTNRTKREIFQPLPLPDYDEYLKIKQDCDNFPTPSAFKNSREGCDSLKSYTEF 368
Query: 339 LNGIENFDPTKLKHTETCEKNPLPTKD 419
+N I N++ +TE + P P D
Sbjct: 369 INNIANYEKELNNNTEGWQPLPFPGYD 395
>AL031627-24|CAA20943.2| 168|Caenorhabditis elegans Hypothetical
protein Y102A5C.2 protein.
Length = 168
Score = 27.1 bits (57), Expect = 8.0
Identities = 18/66 (27%), Positives = 29/66 (43%), Gaps = 2/66 (3%)
Frame = +3
Query: 228 DGIEK-FDSSQLKHTETQEKNPLPDKDAIEAEKEKN-KFLNGIENFDPTKLKHTETCEKN 401
DGI+ L E+ P+P DA+E E+ +N + EN + + + E
Sbjct: 46 DGIDNSVHQDDLNAGVDAERQPVPPGDAVEIEENQNDEVREAAENH--SNREEDQNVENQ 103
Query: 402 PLPTKD 419
P+P D
Sbjct: 104 PIPPGD 109
>AF067216-1|AAC17524.1| 301|Caenorhabditis elegans Hypothetical
protein C35E7.9 protein.
Length = 301
Score = 27.1 bits (57), Expect = 8.0
Identities = 13/54 (24%), Positives = 25/54 (46%)
Frame = +2
Query: 251 EPAEAHRDSGEEPASGQRRYRSGEGKEQIPERHRELRSH*AEAHGDVRKEPAPH 412
E + + SG + A + + E KE+ E +E + + + ++EP PH
Sbjct: 139 EDEKDDKKSGSKDAEKKEEKKEEEKKEEKKEEKKEEKKEDEKKEDEKKEEPKPH 192
>AF040645-7|AAB94977.2| 304|Caenorhabditis elegans Hypothetical
protein F52C6.11 protein.
Length = 304
Score = 27.1 bits (57), Expect = 8.0
Identities = 18/45 (40%), Positives = 23/45 (51%)
Frame = +3
Query: 63 SDTPSLKDLPKVATDLKSQLEGFNTSCLRDVDTNEKIVLPSAEDV 197
S S K+ KVA K QLE SCL ++T E+I A D+
Sbjct: 243 SSEKSTKEKLKVAK--KYQLENLKASCLAKINTLEEIKAALAGDL 285
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,629,161
Number of Sequences: 27780
Number of extensions: 223485
Number of successful extensions: 923
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 868
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 918
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 996506972
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -