Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0046
         (569 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    23   2.8  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    22   3.7  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    21   8.6  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    21   8.6  

>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 15/48 (31%), Positives = 20/48 (41%)
 Frame = +2

Query: 395 HVYLCYVVEHIXNALKMMKKRKLGMSPGTGGPNSMSALIGINVLVLFW 538
           H +  Y    I     M +KRK     G    + + A+IG   L LFW
Sbjct: 177 HTFGAYFGLAISFVFGMKEKRKEHHLEGPSYNSDIFAMIGTIFLWLFW 224


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = -2

Query: 532 QHQHVYPNQGAH 497
           QH H+ P QG H
Sbjct: 175 QHPHMQPQQGQH 186


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 10/47 (21%), Positives = 20/47 (42%)
 Frame = -2

Query: 448 HHLQCILYMFYYIA*VHMPILETDGGSFHNKFGEFWLNCCSLSRVLI 308
           H  +  + + YY   V   +++  G +F N   +       L R+L+
Sbjct: 66  HQYKNPIIVMYYAGAVKAGLVQPQGTTFSNSISQLRKEVSLLYRILL 112


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 7/17 (41%), Positives = 13/17 (76%)
 Frame = -1

Query: 557 EDLQNNSKTTPTRLSQS 507
           ED++NNS+ + +R  +S
Sbjct: 383 EDVENNSEVSKSRTKES 399


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 168,141
Number of Sequences: 438
Number of extensions: 3572
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16381902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)