Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0045
(646 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC6B12.11 |drc1|sld1|DNA replication protein Drc1|Schizosaccha... 29 0.43
SPBC2A9.07c |||zf-PARP-type zinc finger protein|Schizosaccharomy... 27 2.3
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 27 2.3
SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein Ph... 26 4.0
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 26 5.3
SPAC1296.01c ||SPAC22F3.01|phosphoacetylglucosamine mutase |Schi... 25 7.1
SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos... 25 7.1
SPBC29A10.05 |exo1|mut2|exonuclease I Exo1|Schizosaccharomyces p... 25 9.3
SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces ... 25 9.3
>SPAC6B12.11 |drc1|sld1|DNA replication protein
Drc1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 337
Score = 29.5 bits (63), Expect = 0.43
Identities = 26/98 (26%), Positives = 41/98 (41%), Gaps = 2/98 (2%)
Frame = +3
Query: 219 SSPTTPIKPQS*QSLLSLEKYHAMDQFKSWRLTIITTPSLTTANTMTRKSLIKCVVWILS 398
SS P P ++ ++ S+RL + T+P+L N RKSL + +L
Sbjct: 147 SSTMIPTTPSKNPEPVAQHTPTVLETPSSYRLQVYTSPNLLRVNAPCRKSLSE----MLR 202
Query: 399 RNKKLEGDAKTAVDNFINEHSKEIDSS--KLVHTDFSE 506
K +E D + + + E SS LV D S+
Sbjct: 203 ELKDIEDDYGSNEEKILQEFESFSSSSSESLVDRDISQ 240
>SPBC2A9.07c |||zf-PARP-type zinc finger protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 274
Score = 27.1 bits (57), Expect = 2.3
Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 7/55 (12%)
Frame = +3
Query: 402 NKKLEGDAKTAVDNFINEHSKEIDSSKLV------HTD-FSEEACKFTSSSVITE 545
NKK EGD K +D F NE + I K++ H D EE C+ +S E
Sbjct: 80 NKKFEGDIKNCLDGF-NELNDPIVQEKILRAFEQGHVDEEDEERCRKMASDASEE 133
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 27.1 bits (57), Expect = 2.3
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = +3
Query: 408 KLEGDAKTAVDNFINEHSKEIDSSKLVHTDFSEE 509
K+EGDAKT DN + + K D K D++EE
Sbjct: 1306 KIEGDAKTGDDNEMEDLDKMEDLEK---PDYAEE 1336
>SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein
Phf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 538
Score = 26.2 bits (55), Expect = 4.0
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = +3
Query: 459 SKEIDSSKLVHTDFSEEACKFTSSSVITEHGKH 557
+KEI+SSK TD E FT + + + H
Sbjct: 96 AKEIESSKNQETDAKSEQAPFTEDASSSNYAHH 128
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 25.8 bits (54), Expect = 5.3
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = +3
Query: 423 AKTAVDNFINEHSKEIDSSKLVHTDFSEEACKFTSSSVITEHGK 554
A++ +D FIN H+ +DS + T F A S + + GK
Sbjct: 3859 AESVLDYFINVHNSNLDSLSKISTLFFMVANNGFCSPDLPQEGK 3902
>SPAC1296.01c ||SPAC22F3.01|phosphoacetylglucosamine mutase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 542
Score = 25.4 bits (53), Expect = 7.1
Identities = 9/24 (37%), Positives = 12/24 (50%)
Frame = -3
Query: 377 LDETFSCHRICSCKRWRSYYSQSP 306
L E H+ C+ K W YS+ P
Sbjct: 439 LVEVILAHKNCTLKEWNQLYSEIP 462
>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
Rad50|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1290
Score = 25.4 bits (53), Expect = 7.1
Identities = 16/53 (30%), Positives = 27/53 (50%)
Frame = +2
Query: 44 NFNLTAYQGIWYEISKFPNESEKNGKCSSAEYKLEGDVVKVKNVHIIDGVKKY 202
N N +GI E+SK+ + KN + SS + K V+ + I+G+K +
Sbjct: 376 NINEINEEGIMTEVSKYASLVNKNYEISSGKLKERQVAVRAR----IEGIKAH 424
>SPBC29A10.05 |exo1|mut2|exonuclease I Exo1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 571
Score = 25.0 bits (52), Expect = 9.3
Identities = 16/36 (44%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
Frame = +3
Query: 180 SSTASRSI*KGRPSSPTTPI--KPQS*QSLLSLEKY 281
+S SR I PSSP+TPI P+ + +LSL++Y
Sbjct: 534 ASLPSRRIVYKPPSSPSTPISMNPRP-KGILSLQQY 568
>SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 817
Score = 25.0 bits (52), Expect = 9.3
Identities = 19/80 (23%), Positives = 31/80 (38%), Gaps = 5/80 (6%)
Frame = +2
Query: 170 NVHIIDGVKKYIEGTAKLTD-----YANKAAKLTVTFKFGEISRDGSVQVLATDYNNYAI 334
NV ++ + +E T K + NK +L K + RDG V+ L +
Sbjct: 403 NVQKLESTNRALESTIKTLEEDVYTMKNKIIELEGILKSANVERDGLVEKLIAEETLRRK 462
Query: 335 AYNCKYDDKKKSHQVCRLDP 394
+N + K CR+ P
Sbjct: 463 LHNTIQELKGNIRVFCRVRP 482
Score = 25.0 bits (52), Expect = 9.3
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 4/47 (8%)
Frame = +2
Query: 134 EYKLEGDVVKVKNVHIIDGVKKYIE---GTAKLTDYAN-KAAKLTVT 262
EY++EG +++ N IID + E G KL Y + KA + T+T
Sbjct: 600 EYRMEGQFLEIYNETIIDLLASGNEEEKGKKKLEIYHDTKAGRTTIT 646
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,496,806
Number of Sequences: 5004
Number of extensions: 49457
Number of successful extensions: 155
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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