Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0045
         (646 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0805 + 21400345-21400701,21400797-21400975,21401223-214012...    59   3e-09
02_04_0592 - 24171698-24172285                                         48   5e-06
07_01_1023 + 8840754-8842988,8843189-8843362                           31   0.59 
04_03_0673 - 18562497-18563010,18563080-18563471,18563553-185636...    31   0.59 
06_01_0649 + 4698384-4698780,4699047-4699144,4699673-4699697,469...    28   5.5  
01_06_1115 - 34623892-34624129,34624589-34624737,34625017-346251...    28   5.5  
02_01_0704 - 5254458-5254760,5255091-5255182,5255285-5255501,525...    28   7.3  

>08_02_0805 +
           21400345-21400701,21400797-21400975,21401223-21401271,
           21401310-21401390,21401988-21402605
          Length = 427

 Score = 59.3 bits (137), Expect = 3e-09
 Identities = 35/81 (43%), Positives = 46/81 (56%), Gaps = 2/81 (2%)
 Frame = +2

Query: 29  LKPVNNFNLTAYQGIWYEISKFPNESE-KNGKCSSAEYKLEGD-VVKVKNVHIIDGVKKY 202
           +K V N +L  Y G WYEI+ FP+  + ++G  + A Y L GD  VKV N    DG + +
Sbjct: 1   MKVVRNLDLERYMGRWYEIACFPSRFQPRDGTNTRATYTLAGDGAVKVLNETWTDGRRGH 60

Query: 203 IEGTAKLTDYANKAAKLTVTF 265
           IEGTA   D  +  AKL V F
Sbjct: 61  IEGTAYRADPVSDEAKLKVKF 81


>02_04_0592 - 24171698-24172285
          Length = 195

 Score = 48.4 bits (110), Expect = 5e-06
 Identities = 31/84 (36%), Positives = 44/84 (52%), Gaps = 4/84 (4%)
 Frame = +2

Query: 26  ELKPVNNFNLTAYQGIWYEISKFPNESE-KNGKCSSAEYKL--EGDVVKVKN-VHIIDGV 193
           E+  V   ++  Y G WYEI+  PN  + ++G+ + A Y L  +G  V V N      G 
Sbjct: 13  EMTVVRGLDVARYMGRWYEIASLPNFFQPRDGRDTRATYALRPDGATVDVLNETWTSSGK 72

Query: 194 KKYIEGTAKLTDYANKAAKLTVTF 265
           + YI+GTA   D A+  AKL V F
Sbjct: 73  RDYIKGTAYKADPASDEAKLKVKF 96


>07_01_1023 + 8840754-8842988,8843189-8843362
          Length = 802

 Score = 31.5 bits (68), Expect = 0.59
 Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
 Frame = +2

Query: 11  EGTCPELKP-VNNFNLTAYQGIW-YEISKFPNESEKNGKCSSAEYKLEGDVVKVKNVHII 184
           EG C +    + + NL    G+W +++S   N S K G C  A      D++  KN+ I+
Sbjct: 288 EGLCEDANDTIPSTNLMITAGVWGHDVS---NYSAKEGLCEEAN-----DIIPRKNLTIV 339

Query: 185 DGV 193
           DGV
Sbjct: 340 DGV 342


>04_03_0673 -
           18562497-18563010,18563080-18563471,18563553-18563649,
           18563977-18564149,18564349-18564485,18564806-18564872
          Length = 459

 Score = 31.5 bits (68), Expect = 0.59
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = +2

Query: 38  VNNFNLTAYQGIWYEISKFPNESEKNGKCSSAEYKLEGD 154
           V NFN+  + G WY IS   N +     C   E+++EGD
Sbjct: 202 VKNFNMADFNGKWY-ISSGLNPTFDTFDCQLHEFRVEGD 239


>06_01_0649 +
           4698384-4698780,4699047-4699144,4699673-4699697,
           4699809-4699929,4700022-4700156,4700392-4700602
          Length = 328

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 18/57 (31%), Positives = 25/57 (43%)
 Frame = +2

Query: 164 VKNVHIIDGVKKYIEGTAKLTDYANKAAKLTVTFKFGEISRDGSVQVLATDYNNYAI 334
           +KN H +D + KY  G  +   + N  A    +    EI R    QVL  D   YA+
Sbjct: 220 IKN-HTLDWIDKYYPGLFEQIHFGNHFALQGQSKPKSEICRSFGAQVLIDDNPRYAL 275


>01_06_1115 -
           34623892-34624129,34624589-34624737,34625017-34625125,
           34625339-34625408,34625600-34626111,34626420-34626524,
           34626617-34626696
          Length = 420

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 5/56 (8%)
 Frame = +3

Query: 387 WILSRNKKLEGDAKTAVDNFINEHSKEIDS-----SKLVHTDFSEEACKFTSSSVI 539
           W++  N+ L   A+T  + F NE S  +DS     S  + T FS+ A K +SSS I
Sbjct: 86  WLVLINQALNRPAETNANVFQNEPSPSVDSSVSRASSSLDTSFSDLA-KTSSSSTI 140


>02_01_0704 -
           5254458-5254760,5255091-5255182,5255285-5255501,
           5255972-5256068,5256175-5256415,5257100-5257180,
           5257236-5257383
          Length = 392

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 11/41 (26%), Positives = 22/41 (53%)
 Frame = +1

Query: 502 QRKXXXXXXXXXXXXTENIKTEKILEALRGIKLNSNHSIKI 624
           QRK            TEN + E++ E+L G+K +++ ++ +
Sbjct: 167 QRKAVVANRKRTARPTENARPEQLAESLEGVKTDTDRNVSV 207


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,547,588
Number of Sequences: 37544
Number of extensions: 295410
Number of successful extensions: 881
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 857
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 879
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1596695220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)