Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0040
(431 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_A0CF32 Cluster: Chromosome undetermined scaffold_174, w... 36 0.48
UniRef50_UPI0000F316D9 Cluster: UPI0000F316D9 related cluster; n... 34 1.5
UniRef50_Q3TR26 Cluster: 7 days neonate cerebellum cDNA, RIKEN f... 33 3.4
UniRef50_Q6ZSA2 Cluster: CDNA FLJ45698 fis, clone FEBRA2017811; ... 33 3.4
UniRef50_Q6CFZ3 Cluster: Similarities with tr|Q8WZS4 Neurospora ... 33 3.4
UniRef50_UPI0000DBF205 Cluster: UPI0000DBF205 related cluster; n... 32 4.5
UniRef50_Q55DD7 Cluster: Putative uncharacterized protein; n=1; ... 32 4.5
UniRef50_A5K2S6 Cluster: U1 small nuclear ribonucleoprotein 70 k... 32 4.5
UniRef50_Q8N817 Cluster: CDNA FLJ40133 fis, clone TESTI2012231; ... 32 4.5
UniRef50_A5DT36 Cluster: Putative uncharacterized protein; n=2; ... 32 4.5
UniRef50_UPI0000D9AD64 Cluster: PREDICTED: similar to T02H6.3; n... 32 5.9
UniRef50_UPI0000DC03AC Cluster: UPI0000DC03AC related cluster; n... 32 5.9
UniRef50_A0L4U3 Cluster: Small GTP-binding protein; n=1; Magneto... 32 5.9
UniRef50_A5BN99 Cluster: Putative uncharacterized protein; n=1; ... 32 5.9
UniRef50_UPI0000DC07CE Cluster: UPI0000DC07CE related cluster; n... 31 7.8
UniRef50_Q2UKZ1 Cluster: Predicted protein; n=6; Trichocomaceae|... 31 7.8
UniRef50_Q2H584 Cluster: Putative uncharacterized protein; n=1; ... 31 7.8
>UniRef50_A0CF32 Cluster: Chromosome undetermined scaffold_174,
whole genome shotgun sequence; n=2; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_174,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 792
Score = 35.5 bits (78), Expect = 0.48
Identities = 21/63 (33%), Positives = 32/63 (50%)
Frame = -2
Query: 214 FTPSLENTSKTFPP*VHTRRNNNAQLIPAYTQQHRTIHAKHKHNYTHTQFIHSFKRHKLN 35
F P L+ + +H+ NNN LIP T Q R I+ K ++F+ F+ +KLN
Sbjct: 53 FIPYLKELQTSIQQDIHSPFNNNIYLIPVLTNQLREIYIK------TSEFLIRFQDYKLN 106
Query: 34 TQV 26
T +
Sbjct: 107 TLI 109
>UniRef50_UPI0000F316D9 Cluster: UPI0000F316D9 related cluster; n=1;
Bos taurus|Rep: UPI0000F316D9 UniRef100 entry - Bos
Taurus
Length = 315
Score = 33.9 bits (74), Expect = 1.5
Identities = 23/70 (32%), Positives = 33/70 (47%), Gaps = 4/70 (5%)
Frame = -1
Query: 212 HSITREHIQNLSTLGSHTTE*QRTTHSRLYTT----TQDNSRKTQTQLHTHTIYTQL*KT 45
H TR HI L+ + +HT+ H + T T + T +HTHT++TQL T
Sbjct: 231 HKHTRTHIY-LTHMCTHTSHTHTCAHIHVPHTHTPHTHMCAHTPHTHIHTHTLHTQLALT 289
Query: 44 QIEYASFIYL 15
I + YL
Sbjct: 290 HIHTRAHTYL 299
>UniRef50_Q3TR26 Cluster: 7 days neonate cerebellum cDNA, RIKEN
full-length enriched library, clone:A730017H24
product:hypothetical Serine-rich region profile
containing protein, full insert sequence; n=3;
Murinae|Rep: 7 days neonate cerebellum cDNA, RIKEN
full-length enriched library, clone:A730017H24
product:hypothetical Serine-rich region profile
containing protein, full insert sequence - Mus musculus
(Mouse)
Length = 453
Score = 32.7 bits (71), Expect = 3.4
Identities = 20/59 (33%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Frame = -3
Query: 306 VSRVSVEQAREPGRVTARRRLQQRCGQTHS-PSLHHSRTHPKPFHLRFTHDGITTHNSF 133
VSR + A EPG T + + GQ HS P S++HP P + I N+F
Sbjct: 134 VSRQASHPALEPGEPTVLSQKRNSSGQEHSGPPFSWSQSHPPPSDHPSSSGSIKNGNNF 192
>UniRef50_Q6ZSA2 Cluster: CDNA FLJ45698 fis, clone FEBRA2017811;
n=3; Homo sapiens|Rep: CDNA FLJ45698 fis, clone
FEBRA2017811 - Homo sapiens (Human)
Length = 415
Score = 32.7 bits (71), Expect = 3.4
Identities = 23/69 (33%), Positives = 34/69 (49%)
Frame = -1
Query: 221 IRLHSITREHIQNLSTLGSHTTE*QRTTHSRLYTTTQDNSRKTQTQLHTHTIYTQL*KTQ 42
I +HS T HI TL T+ TH+ ++ ++R T T +HTHT+ TQ
Sbjct: 161 IHIHSDTHLHIYT-HTLTCTQTQIHTCTHTHIHIHMPTHTR-TYTHMHTHTLTC----TQ 214
Query: 41 IEYASFIYL 15
I + IY+
Sbjct: 215 IHIYTHIYM 223
>UniRef50_Q6CFZ3 Cluster: Similarities with tr|Q8WZS4 Neurospora
crassa hypothetical 138.9 kDa protein; n=1; Yarrowia
lipolytica|Rep: Similarities with tr|Q8WZS4 Neurospora
crassa hypothetical 138.9 kDa protein - Yarrowia
lipolytica (Candida lipolytica)
Length = 916
Score = 32.7 bits (71), Expect = 3.4
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = -3
Query: 288 EQAREPGRVTARRRLQQRCGQTHSPSLHHSRTHPKPFH 175
+QA++ + + + Q+ Q H P LHH + HP P H
Sbjct: 26 QQAQQHQQQAQQHQQHQQQQQQHPPQLHHPQHHPHPQH 63
>UniRef50_UPI0000DBF205 Cluster: UPI0000DBF205 related cluster; n=2;
Eutheria|Rep: UPI0000DBF205 UniRef100 entry - Rattus
norvegicus
Length = 371
Score = 32.3 bits (70), Expect = 4.5
Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 4/52 (7%)
Frame = -1
Query: 212 HSITREHIQNLSTLGSHT-TE*QRTTHSRLYTTTQDNSRK---TQTQLHTHT 69
H+ T H + +HT T TH+ +T T DN + T T HTHT
Sbjct: 209 HTHTHSHTHRILLQETHTHTHTHTHTHTHTHTITTDNQEQPTHTHTHTHTHT 260
>UniRef50_Q55DD7 Cluster: Putative uncharacterized protein; n=1;
Dictyostelium discoideum AX4|Rep: Putative
uncharacterized protein - Dictyostelium discoideum AX4
Length = 1342
Score = 32.3 bits (70), Expect = 4.5
Identities = 19/57 (33%), Positives = 31/57 (54%)
Frame = -2
Query: 205 SLENTSKTFPP*VHTRRNNNAQLIPAYTQQHRTIHAKHKHNYTHTQFIHSFKRHKLN 35
S E+++K PP + RR +N ++ Y QQH+ H + +H + + IH K LN
Sbjct: 991 SNESSTKISPPFLSPRRKSNPAILQVYAQQHQ--H-QQQHQHLQKKSIH-IKSSPLN 1043
>UniRef50_A5K2S6 Cluster: U1 small nuclear ribonucleoprotein 70 kDa,
putative; n=6; Plasmodium|Rep: U1 small nuclear
ribonucleoprotein 70 kDa, putative - Plasmodium vivax
Length = 452
Score = 32.3 bits (70), Expect = 4.5
Identities = 14/32 (43%), Positives = 16/32 (50%)
Frame = -2
Query: 166 HTRRNNNAQLIPAYTQQHRTIHAKHKHNYTHT 71
H R +N + P Y H HA H HNY HT
Sbjct: 343 HNRDHNRDEHNPDYDHSHNRDHA-HNHNYNHT 373
>UniRef50_Q8N817 Cluster: CDNA FLJ40133 fis, clone TESTI2012231;
n=2; Homo sapiens|Rep: CDNA FLJ40133 fis, clone
TESTI2012231 - Homo sapiens (Human)
Length = 225
Score = 32.3 bits (70), Expect = 4.5
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = -3
Query: 222 HSPSLHHSRTHPKPFHLRFTHDGITTHNS 136
HSP++H++ TH H +TH TTH +
Sbjct: 25 HSPTIHNTHTHHSHTHTIWTHHTHTTHTT 53
>UniRef50_A5DT36 Cluster: Putative uncharacterized protein; n=2;
Eukaryota|Rep: Putative uncharacterized protein -
Lodderomyces elongisporus (Yeast) (Saccharomyces
elongisporus)
Length = 725
Score = 32.3 bits (70), Expect = 4.5
Identities = 14/46 (30%), Positives = 21/46 (45%)
Frame = -2
Query: 166 HTRRNNNAQLIPAYTQQHRTIHAKHKHNYTHTQFIHSFKRHKLNTQ 29
H +N + P Q H +H+ + H QF HS + LN+Q
Sbjct: 612 HIHQNLRTRAFPHQQHQQHQQHQQHQQHQQHQQFNHSCHYNNLNSQ 657
>UniRef50_UPI0000D9AD64 Cluster: PREDICTED: similar to T02H6.3; n=2;
Macaca mulatta|Rep: PREDICTED: similar to T02H6.3 -
Macaca mulatta
Length = 457
Score = 31.9 bits (69), Expect = 5.9
Identities = 18/47 (38%), Positives = 24/47 (51%)
Frame = -1
Query: 212 HSITREHIQNLSTLGSHTTE*QRTTHSRLYTTTQDNSRKTQTQLHTH 72
H++ REH Q S +HT QR++HS T R+ TQ TH
Sbjct: 386 HTLGREHTQRSSHRRTHT---QRSSHSEERTLRGSQLRQAHTQRGTH 429
>UniRef50_UPI0000DC03AC Cluster: UPI0000DC03AC related cluster; n=1;
Rattus norvegicus|Rep: UPI0000DC03AC UniRef100 entry -
Rattus norvegicus
Length = 260
Score = 31.9 bits (69), Expect = 5.9
Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Frame = -1
Query: 221 IRLHSITREHIQNLSTLGSHTTE*QRTTHSRLYTTTQDNSRK-TQTQLHTHTI 66
+ HS T HI S +HT TH+ Y+ T +S T T HTHT+
Sbjct: 117 LHTHSYTHSHILTHSHTVTHTYT-HTHTHTHTYSHTLTHSHTVTHTHSHTHTL 168
>UniRef50_A0L4U3 Cluster: Small GTP-binding protein; n=1;
Magnetococcus sp. MC-1|Rep: Small GTP-binding protein -
Magnetococcus sp. (strain MC-1)
Length = 761
Score = 31.9 bits (69), Expect = 5.9
Identities = 13/22 (59%), Positives = 17/22 (77%)
Frame = -3
Query: 276 EPGRVTARRRLQQRCGQTHSPS 211
+PGRVT ++RLQQR Q H P+
Sbjct: 735 KPGRVTLKQRLQQRRMQAHEPT 756
>UniRef50_A5BN99 Cluster: Putative uncharacterized protein; n=1;
Vitis vinifera|Rep: Putative uncharacterized protein -
Vitis vinifera (Grape)
Length = 271
Score = 31.9 bits (69), Expect = 5.9
Identities = 15/30 (50%), Positives = 17/30 (56%)
Frame = -3
Query: 225 THSPSLHHSRTHPKPFHLRFTHDGITTHNS 136
T SP+ H P HLRFTH TTH+S
Sbjct: 146 TRSPTTHSWPLWPPHAHLRFTHSLPTTHSS 175
>UniRef50_UPI0000DC07CE Cluster: UPI0000DC07CE related cluster; n=1;
Rattus norvegicus|Rep: UPI0000DC07CE UniRef100 entry -
Rattus norvegicus
Length = 201
Score = 31.5 bits (68), Expect = 7.8
Identities = 17/48 (35%), Positives = 26/48 (54%)
Frame = -1
Query: 215 LHSITREHIQNLSTLGSHTTE*QRTTHSRLYTTTQDNSRKTQTQLHTH 72
+H+ H+Q L+ G+HT R TH+ +T T R T T+ HT+
Sbjct: 117 IHTFRHSHMQALTHAGTHTC---RHTHTETHTHT---CRHTHTETHTY 158
>UniRef50_Q2UKZ1 Cluster: Predicted protein; n=6;
Trichocomaceae|Rep: Predicted protein - Aspergillus
oryzae
Length = 356
Score = 31.5 bits (68), Expect = 7.8
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = +2
Query: 221 WVWPQRCWRRRRAVTRPGSRA 283
W+WPQ W RR P SRA
Sbjct: 324 WIWPQDAWHRREGGGAPRSRA 344
>UniRef50_Q2H584 Cluster: Putative uncharacterized protein; n=1;
Chaetomium globosum|Rep: Putative uncharacterized
protein - Chaetomium globosum (Soil fungus)
Length = 826
Score = 31.5 bits (68), Expect = 7.8
Identities = 15/41 (36%), Positives = 20/41 (48%)
Frame = -3
Query: 288 EQAREPGRVTARRRLQQRCGQTHSPSLHHSRTHPKPFHLRF 166
E+ REPG + A +C H+P L H R F+ RF
Sbjct: 562 ERVREPGMIIAPCTNHTKCPMYHTPGLSHGRKDFCHFNQRF 602
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 292,745,465
Number of Sequences: 1657284
Number of extensions: 4823973
Number of successful extensions: 17788
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 16683
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17670
length of database: 575,637,011
effective HSP length: 93
effective length of database: 421,509,599
effective search space used: 21075479950
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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