Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0040
         (431 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch...    25   6.6  
SPAC3C7.06c |pit1||serine/threonine protein kinase Pit1|Schizosa...    24   8.7  

>SPBP19A11.04c |mor2|cps12|morphogenesis protein
            Mor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2196

 Score = 24.6 bits (51), Expect = 6.6
 Identities = 15/67 (22%), Positives = 28/67 (41%), Gaps = 4/67 (5%)
 Frame = -3

Query: 321  IGSIDVSRVSVEQAREPGRVTARRR----LQQRCGQTHSPSLHHSRTHPKPFHLRFTHDG 154
            +G+    R+S+++ R    +   +     L Q     +  S+    TH   +HLR    G
Sbjct: 2120 LGNSAEHRLSLDEIRGAAELKQNKNWNSMLDQSVSMINEDSVEDHETHENYYHLRTMFQG 2179

Query: 153  ITTHNSF 133
              ++ SF
Sbjct: 2180 SESNESF 2186


>SPAC3C7.06c |pit1||serine/threonine protein kinase
           Pit1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 650

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 16/48 (33%), Positives = 22/48 (45%)
 Frame = -3

Query: 333 VTDLIGSIDVSRVSVEQAREPGRVTARRRLQQRCGQTHSPSLHHSRTH 190
           ++DLI S  +S +S E  RE   V +           HSP+LH    H
Sbjct: 516 LSDLI-SPQLSILSHEDKRENQSVNSESSKYSPRSSNHSPTLHSKDLH 562


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,239,062
Number of Sequences: 5004
Number of extensions: 20099
Number of successful extensions: 61
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 61
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 154067960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)