Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0040
         (431 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0010 + 72162-74303,74470-74545,75971-76043,76496-76540,779...    27   4.9  
02_01_0108 - 789597-790224,790441-790570,790946-791081                 27   4.9  
01_03_0282 - 14580875-14580891,14582126-14585855                       27   4.9  
05_07_0287 + 28993615-28995617,28996464-28996524,28996603-28996830     27   8.6  
02_05_0623 + 30446420-30446525,30446635-30446715,30446811-304469...    27   8.6  
01_06_0715 + 31416338-31416500,31416601-31416710,31416808-314168...    27   8.6  

>07_01_0010 + 72162-74303,74470-74545,75971-76043,76496-76540,
            77916-78116,78463-78541,78637-78678,78788-78847,
            79087-80484,80777-80902,81037-81300
          Length = 1501

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 13/48 (27%), Positives = 23/48 (47%)
 Frame = -1

Query: 200  REHIQNLSTLGSHTTE*QRTTHSRLYTTTQDNSRKTQTQLHTHTIYTQ 57
            +EHI N +++  +      + HS L+ T +  SR+ +     H  Y Q
Sbjct: 1087 QEHINNYTSVNDYAVTSNPSFHSELHKTLEPISREEREDCMWHIRYRQ 1134


>02_01_0108 - 789597-790224,790441-790570,790946-791081
          Length = 297

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 15/52 (28%), Positives = 19/52 (36%)
 Frame = -3

Query: 300 RVSVEQAREPGRVTARRRLQQRCGQTHSPSLHHSRTHPKPFHLRFTHDGITT 145
           RV   Q   P  + A          T  PSLHH   HP    ++ +    TT
Sbjct: 116 RVMQAQGSIPNNLAAAAAEVTSMSTTEPPSLHHHHHHPHHHQIKNSSGSTTT 167


>01_03_0282 - 14580875-14580891,14582126-14585855
          Length = 1248

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 14/56 (25%), Positives = 25/56 (44%)
 Frame = -2

Query: 181 FPP*VHTRRNNNAQLIPAYTQQHRTIHAKHKHNYTHTQFIHSFKRHKLNTQVLFIY 14
           FP  +    +  A  IP +  +   I AKH H+  +    HS+   +L  ++  +Y
Sbjct: 568 FPQHLLKYNSLRALCIPNFRGRPCLIQAKHLHHLRYLNLSHSWNMERLPEEISILY 623


>05_07_0287 + 28993615-28995617,28996464-28996524,28996603-28996830
          Length = 763

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 9/15 (60%), Positives = 13/15 (86%)
 Frame = -3

Query: 273 PGRVTARRRLQQRCG 229
           PG+ TAR+++Q RCG
Sbjct: 253 PGKCTARKQIQVRCG 267


>02_05_0623 +
           30446420-30446525,30446635-30446715,30446811-30446987,
           30447629-30447799,30448239-30448448,30448634-30448722,
           30449318-30450010
          Length = 508

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 16/57 (28%), Positives = 24/57 (42%), Gaps = 3/57 (5%)
 Frame = -3

Query: 372 RPKSLRVGHKKLFVTDLIGSI---DVSRVSVEQAREPGRVTARRRLQQRCGQTHSPS 211
           RP+  R+ H K F  D  G+I   D   +++ +  + G  T       R G    PS
Sbjct: 142 RPREARMNHPKGFTVDGRGNIYVADAMNMAIRKISDTGVTTIAGGKSSRGGHVDGPS 198


>01_06_0715 +
           31416338-31416500,31416601-31416710,31416808-31416880,
           31416988-31417135,31417867-31418133,31418234-31418576,
           31418665-31418802,31419389-31419514,31419626-31419838,
           31419918-31420164,31420247-31420446,31420538-31420891,
           31420984-31421568
          Length = 988

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +2

Query: 140 LCVVIPSCVNLRWKGFGCVLE*WSEGEWVW 229
           + +++ S + LRW G G  +E W   E  W
Sbjct: 808 ISIIVTSVLELRWSGIG--IEDWWRNEQFW 835


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,867,767
Number of Sequences: 37544
Number of extensions: 135365
Number of successful extensions: 463
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 452
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 463
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 814473264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)