Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0040
(431 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_35460| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.019
SB_15720| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.53
SB_52468| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.53
SB_47423| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.71
SB_40017| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.71
SB_39564| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.93
SB_55803| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.6
SB_49798| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.6
SB_30679| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.2
SB_56900| Best HMM Match : I-set (HMM E-Value=8e-10) 28 3.8
SB_430| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.8
SB_42552| Best HMM Match : RhoGAP (HMM E-Value=0) 28 3.8
SB_53093| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.0
SB_14830| Best HMM Match : NADH5_C (HMM E-Value=1.1) 27 5.0
SB_44956| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.0
SB_41301| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.0
SB_29585| Best HMM Match : 7tm_1 (HMM E-Value=2.5e-07) 27 5.0
SB_38134| Best HMM Match : Merozoite_SPAM (HMM E-Value=0.99) 27 6.6
SB_20635| Best HMM Match : rve (HMM E-Value=0.91) 27 6.6
SB_3948| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.6
SB_25409| Best HMM Match : PSD1 (HMM E-Value=7.2) 27 8.7
SB_55632| Best HMM Match : Vicilin_N (HMM E-Value=8.1) 27 8.7
SB_36072| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.7
SB_22642| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.7
>SB_35460| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 511
Score = 35.5 bits (78), Expect = 0.019
Identities = 20/70 (28%), Positives = 32/70 (45%)
Frame = -2
Query: 211 TPSLENTSKTFPP*VHTRRNNNAQLIPAYTQQHRTIHAKHKHNYTHTQFIHSFKRHKLNT 32
TP++ N P H R + + Q+ Y QQH + H++ Y H Q HS+ +
Sbjct: 225 TPTITNGYHQHPQVTH-RYHQHPQVTHRYHQQHPQV--THRYQYQHPQVTHSYFNNTHKL 281
Query: 31 QVLFIYCEHK 2
++ I HK
Sbjct: 282 LIIIIINTHK 291
>SB_15720| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1277
Score = 30.7 bits (66), Expect = 0.53
Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 4/54 (7%)
Frame = -1
Query: 218 RLHSITREHIQNLS-TLGSHTTE*QRTTHS---RLYTTTQDNSRKTQTQLHTHT 69
R + TR H + S T SHT TT S R TT+ ++R+ TQL +HT
Sbjct: 1093 RSSNTTRSHTRRSSNTTRSHTGRSSNTTRSHTRRSSNTTRGHTRRQVTQLASHT 1146
>SB_52468| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 201
Score = 30.7 bits (66), Expect = 0.53
Identities = 16/57 (28%), Positives = 31/57 (54%), Gaps = 4/57 (7%)
Frame = -1
Query: 218 RLHSITREHIQNLSTLGSHTTE*Q----RTTHSRLYTTTQDNSRKTQTQLHTHTIYT 60
+++++TR + + + TL E R R+YT T+ N+ T T+L+ ++YT
Sbjct: 64 KMYTLTRLNAEKMYTLTRFNAEKMYTLTRLNAERMYTLTRFNAESTYTRLNAESMYT 120
Score = 29.1 bits (62), Expect = 1.6
Identities = 15/53 (28%), Positives = 30/53 (56%)
Frame = -1
Query: 218 RLHSITREHIQNLSTLGSHTTE*QRTTHSRLYTTTQDNSRKTQTQLHTHTIYT 60
+++++TR + + + TL R R+YT T+ N+ T T+L+ ++YT
Sbjct: 128 KMYTLTRFNAEKMYTL-------TRLNAERMYTLTRFNAESTYTRLNAESMYT 173
Score = 27.9 bits (59), Expect = 3.8
Identities = 15/57 (26%), Positives = 31/57 (54%), Gaps = 4/57 (7%)
Frame = -1
Query: 218 RLHSITREHIQNLSTLGSHTTE*Q----RTTHSRLYTTTQDNSRKTQTQLHTHTIYT 60
+++++TR + + + TL E R +R+YT T+ N+ + T+L+ +YT
Sbjct: 11 KMYTLTRLNAEKMYTLTRLNAEKMYTLTRLNANRMYTLTRFNAERKYTRLNAEKMYT 67
>SB_47423| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 855
Score = 30.3 bits (65), Expect = 0.71
Identities = 15/39 (38%), Positives = 18/39 (46%)
Frame = +2
Query: 164 VNLRWKGFGCVLE*WSEGEWVWPQRCWRRRRAVTRPGSR 280
+NL W F + W P R W +RR VT PG R
Sbjct: 195 LNLNWLVFPVLKAVWVTCGLRHPNRDWIKRRCVTHPGPR 233
>SB_40017| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 512
Score = 30.3 bits (65), Expect = 0.71
Identities = 16/40 (40%), Positives = 19/40 (47%)
Frame = -3
Query: 267 RVTARRRLQQRCGQTHSPSLHHSRTHPKPFHLRFTHDGIT 148
R R RL + CG + S+ P LRF HDGIT
Sbjct: 149 RKRLRNRLNEECGAYENISVVKDLAPPDLEMLRFIHDGIT 188
>SB_39564| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 279
Score = 29.9 bits (64), Expect = 0.93
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = -2
Query: 166 HTRRNNNAQLIPAYTQQHRTIHAKHKHNYTHTQFIHSFKRHKLNT 32
H+ R+ N A++ + H +H H+ THTQ S + LNT
Sbjct: 33 HSTRSLNTHTQHAHSTRSLNTHTQHAHSDTHTQHARSIR--TLNT 75
Score = 29.9 bits (64), Expect = 0.93
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = -2
Query: 166 HTRRNNNAQLIPAYTQQHRTIHAKHKHNYTHTQFIHSFKRHKLNT 32
H+ R+ N A++ + H +H H+ THTQ S + LNT
Sbjct: 220 HSTRSLNTHTQHAHSTRSLNTHTQHAHSDTHTQHARSIR--TLNT 262
Score = 27.9 bits (59), Expect = 3.8
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Frame = -1
Query: 212 HSITR-EHIQNLSTLGSHTTE*QRTTHSRLYTTTQDNSRKTQTQLHTHTIYT 60
HS T +H +++ TL +HT RT ++ + TQT H H+ +T
Sbjct: 59 HSDTHTQHARSIRTLNTHTPHSTRTLNTHTQHAHLTRTLNTQTP-HVHSTHT 109
Score = 27.5 bits (58), Expect = 5.0
Identities = 13/45 (28%), Positives = 19/45 (42%)
Frame = -2
Query: 166 HTRRNNNAQLIPAYTQQHRTIHAKHKHNYTHTQFIHSFKRHKLNT 32
H+ R + A+ +H T A H H T T +H+ H T
Sbjct: 119 HSTRKLHTYTQHAHLTRHSTTRALHTHTQTRTLNMHTQHAHSART 163
>SB_55803| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 190
Score = 29.1 bits (62), Expect = 1.6
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = -2
Query: 163 TRRNNNAQLIPAYTQQHRTIHAKHKHNYTHTQFIHSFKRH 44
TR N+ T +H ++H KHN T +H+ RH
Sbjct: 68 TRHNSLNSTTRHNTTRHNSLHNTTKHNTTRHNSLHNTTRH 107
>SB_49798| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1137
Score = 29.1 bits (62), Expect = 1.6
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = -1
Query: 164 HTTE*QRTTHSRLYTTTQDNSRKTQTQLHTHTIYTQL 54
HTT+ Q+ T+++ T TQ + T HT TQL
Sbjct: 341 HTTDTQQATNTQQTTNTQQKTNTQLTSSTQHTTNTQL 377
Score = 28.3 bits (60), Expect = 2.8
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = -1
Query: 164 HTTE*QRTTHSRLYTTTQDNSRKTQTQLHTHTIYTQ 57
HTT+ Q+ T+++ T TQ + QT HT TQ
Sbjct: 311 HTTDTQQATNTQHTTDTQQTTDTQQTSSTQHTTDTQ 346
Score = 27.1 bits (57), Expect = 6.6
Identities = 15/41 (36%), Positives = 20/41 (48%)
Frame = -1
Query: 179 STLGSHTTE*QRTTHSRLYTTTQDNSRKTQTQLHTHTIYTQ 57
+T TT+ Q TT ++ T TQ + QT HT TQ
Sbjct: 276 ATNTQQTTDTQHTTDTQQATNTQQTTDTQQTSSTQHTTDTQ 316
Score = 26.6 bits (56), Expect = 8.7
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = -1
Query: 161 TTE*QRTTHSRLYTTTQDNSRKTQTQLHTHTIYTQ 57
TT+ Q+TT+++ + TQ S QT HT T+
Sbjct: 390 TTDTQQTTNTQQTSNTQQTSNTQQTTSMQHTTKTK 424
>SB_30679| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 132
Score = 28.7 bits (61), Expect = 2.2
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -2
Query: 154 NNNAQLIPAYTQQHRTIHAKHKHNYTH 74
+NN Q IP Y QQH T++ +N H
Sbjct: 67 DNNPQHIPNYRQQHSTLYPTTDNNPQH 93
>SB_56900| Best HMM Match : I-set (HMM E-Value=8e-10)
Length = 968
Score = 27.9 bits (59), Expect = 3.8
Identities = 17/47 (36%), Positives = 25/47 (53%)
Frame = -2
Query: 217 AFTPSLENTSKTFPP*VHTRRNNNAQLIPAYTQQHRTIHAKHKHNYT 77
A+TPS + + VHTR + + AYT H +HA++ H YT
Sbjct: 814 AYTPSTPSPTHR----VHTRLHT--KYTHAYTPIHPRLHAEYTHAYT 854
>SB_430| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2202
Score = 27.9 bits (59), Expect = 3.8
Identities = 13/40 (32%), Positives = 17/40 (42%)
Frame = -2
Query: 178 PP*VHTRRNNNAQLIPAYTQQHRTIHAKHKHNYTHTQFIH 59
P V R N L Y + H+ H H+Y H Q+ H
Sbjct: 925 PNGVQARPNMPGTLPGNYPESHKRHRHSHHHHYQHYQYNH 964
>SB_42552| Best HMM Match : RhoGAP (HMM E-Value=0)
Length = 945
Score = 27.9 bits (59), Expect = 3.8
Identities = 13/34 (38%), Positives = 15/34 (44%)
Frame = -3
Query: 231 GQTHSPSLHHSRTHPKPFHLRFTHDGITTHNSFP 130
G HS ++H THP H T G TT P
Sbjct: 720 GVVHSSAMHSGVTHPSVTHSGVTPTGSTTIGVIP 753
>SB_53093| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 93
Score = 27.5 bits (58), Expect = 5.0
Identities = 15/54 (27%), Positives = 25/54 (46%)
Frame = -1
Query: 203 TREHIQNLSTLGSHTTE*QRTTHSRLYTTTQDNSRKTQTQLHTHTIYTQL*KTQ 42
T+++ Q + T + T+ RT H+ T + TQ H YTQ +T+
Sbjct: 19 TKDYTQTMRTKHADYTQTMRTKHAEYTQTMRIKHGYTQIMRTKHADYTQTMRTK 72
>SB_14830| Best HMM Match : NADH5_C (HMM E-Value=1.1)
Length = 175
Score = 27.5 bits (58), Expect = 5.0
Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = -2
Query: 103 HAKHKHNYTHTQ-FIHSFKRHKLNTQVLFIY 14
H H H++ H Q +IH + RH+LNT I+
Sbjct: 107 HHFHLHHHLHYQNYIHPY-RHRLNTHQALIW 136
>SB_44956| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 736
Score = 27.5 bits (58), Expect = 5.0
Identities = 11/37 (29%), Positives = 16/37 (43%)
Frame = -2
Query: 127 YTQQHRTIHAKHKHNYTHTQFIHSFKRHKLNTQVLFI 17
+ H H H H++ H Q H H +N V+ I
Sbjct: 270 HQHHHHHHHHHHNHHHHHQQHHHHHHHHIINIIVIII 306
>SB_41301| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 215
Score = 27.5 bits (58), Expect = 5.0
Identities = 16/54 (29%), Positives = 24/54 (44%)
Frame = -2
Query: 205 SLENTSKTFPP*VHTRRNNNAQLIPAYTQQHRTIHAKHKHNYTHTQFIHSFKRH 44
SL NT++ P +T R+N+ + H T HN T +H+ RH
Sbjct: 67 SLPNTTRHNSP-PNTTRHNSLPNTTRHNSLHNTTRHNCLHNTTRHNSLHNTTRH 119
>SB_29585| Best HMM Match : 7tm_1 (HMM E-Value=2.5e-07)
Length = 408
Score = 27.5 bits (58), Expect = 5.0
Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = -1
Query: 167 SHTTE*QRTTHSRL-YTTTQDNSRKTQTQLHTHTIYTQL 54
+H QR+TH + +TQ NS + TQ++T + TQ+
Sbjct: 304 THVNTDQRSTHVKTDQRSTQVNSDQRSTQMNTDQLSTQI 342
>SB_38134| Best HMM Match : Merozoite_SPAM (HMM E-Value=0.99)
Length = 612
Score = 27.1 bits (57), Expect = 6.6
Identities = 16/45 (35%), Positives = 19/45 (42%)
Frame = -2
Query: 157 RNNNAQLIPAYTQQHRTIHAKHKHNYTHTQFIHSFKRHKLNTQVL 23
+ NN Q P Q H+ H H H H K HK T+VL
Sbjct: 155 QGNNEQQEPTDEQHHKRHHHHHHH--------HRHKHHKSTTKVL 191
>SB_20635| Best HMM Match : rve (HMM E-Value=0.91)
Length = 748
Score = 27.1 bits (57), Expect = 6.6
Identities = 18/51 (35%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
Frame = -3
Query: 279 REPGRVTARRRLQQRCGQTHSPSLHHSRTHPKPFHLRFT-HDGITTHNSFP 130
++P T R + G PS + THP P H R T HD I T P
Sbjct: 341 QQPPATTTRMKTDAP-GVPEKPSDNSILTHPSPDHSRPTPHDPIATKGLAP 390
>SB_3948| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1112
Score = 27.1 bits (57), Expect = 6.6
Identities = 11/24 (45%), Positives = 12/24 (50%)
Frame = -2
Query: 145 AQLIPAYTQQHRTIHAKHKHNYTH 74
AQ P H TI+ KH H Y H
Sbjct: 691 AQNRPLLLSNHLTINTKHHHRYIH 714
>SB_25409| Best HMM Match : PSD1 (HMM E-Value=7.2)
Length = 889
Score = 26.6 bits (56), Expect = 8.7
Identities = 19/46 (41%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Frame = -1
Query: 164 HTTE*QRTTHSRLYTTTQDNSRKTQTQL-HTHTIY--TQL*KTQIE 36
HT E R TH R Y T ++ R T + HTH Y TQ T I+
Sbjct: 559 HTHETYRLTHER-YRHTNESYRNTHERYRHTHERYRRTQAYSTAID 603
>SB_55632| Best HMM Match : Vicilin_N (HMM E-Value=8.1)
Length = 148
Score = 26.6 bits (56), Expect = 8.7
Identities = 16/48 (33%), Positives = 20/48 (41%), Gaps = 3/48 (6%)
Frame = -2
Query: 163 TRRNNNAQLIPAYTQQHRTIHA---KHKHNYTHTQFIHSFKRHKLNTQ 29
T +N+ Y QQHRT+H HN T QF + H Q
Sbjct: 73 TVQNSAHNSTEQYPQQHRTVHTTVQNSTHNRTE-QFAQQYSPHNSTEQ 119
>SB_36072| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 498
Score = 26.6 bits (56), Expect = 8.7
Identities = 12/45 (26%), Positives = 22/45 (48%)
Frame = -2
Query: 166 HTRRNNNAQLIPAYTQQHRTIHAKHKHNYTHTQFIHSFKRHKLNT 32
HT R ++ L+ + H T + H ++H + + K+H NT
Sbjct: 394 HTTRYSHNTLLTLHAATHTTRYTTHNTRFSHCKLL---KQHATNT 435
>SB_22642| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1574
Score = 26.6 bits (56), Expect = 8.7
Identities = 13/56 (23%), Positives = 20/56 (35%)
Frame = -3
Query: 291 VEQAREPGRVTARRRLQQRCGQTHSPSLHHSRTHPKPFHLRFTHDGITTHNSFPLI 124
V G++ R Q G + +P L+ + G THN PL+
Sbjct: 670 VSNPNHSGQMGVNREFQSLTGDDRAQYSCSPSADQQPLKLKLSMSGYNTHNPLPLL 725
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,730,948
Number of Sequences: 59808
Number of extensions: 186279
Number of successful extensions: 1009
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 819
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 994
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 822495283
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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