Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0040
(431 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AK127601-1|BAC87052.1| 415|Homo sapiens protein ( Homo sapiens ... 33 0.55
AK097452-1|BAC05058.1| 225|Homo sapiens protein ( Homo sapiens ... 32 0.73
AK123631-1|BAC85667.1| 207|Homo sapiens protein ( Homo sapiens ... 31 2.2
AK023742-1|BAB14664.1| 1081|Homo sapiens protein ( Homo sapiens ... 31 2.2
AK124784-1|BAC85948.1| 218|Homo sapiens protein ( Homo sapiens ... 30 3.9
BT007311-1|AAP35975.1| 693|Homo sapiens G protein-coupled recep... 29 5.1
BC146778-1|AAI46779.1| 1555|Homo sapiens PCF11, cleavage and pol... 29 5.1
BC065384-1|AAH65384.2| 1555|Homo sapiens PCF11, cleavage and pol... 29 5.1
BC008770-1|AAH08770.1| 693|Homo sapiens G protein-coupled recep... 29 5.1
AY358400-1|AAQ88766.1| 693|Homo sapiens GPR56 protein. 29 5.1
AJ011001-1|CAB37294.1| 687|Homo sapiens TM7XN1 protein protein. 29 5.1
AF106858-1|AAD30545.1| 693|Homo sapiens G-protein-coupled recep... 29 5.1
AF046935-1|AAC03107.1| 725|Homo sapiens PCF11p homolog protein. 29 5.1
AB065909-1|BAC06124.1| 693|Homo sapiens seven transmembrane hel... 29 5.1
AB020631-1|BAA74847.1| 1644|Homo sapiens KIAA0824 protein protein. 29 5.1
BC151206-1|AAI51207.1| 1837|Homo sapiens KIAA0913 protein protein. 29 9.0
BC117205-1|AAI17206.1| 1101|Homo sapiens KIAA0913 protein protein. 29 9.0
BC063694-1|AAH63694.1| 230|Homo sapiens KIAA0913 protein protein. 29 9.0
BC040726-1|AAH40726.1| 349|Homo sapiens KIAA0913 protein protein. 29 9.0
AK128134-1|BAC87289.1| 377|Homo sapiens member 6 (SLC12A6). pr... 29 9.0
>AK127601-1|BAC87052.1| 415|Homo sapiens protein ( Homo sapiens
cDNA FLJ45698 fis, clone FEBRA2017811. ).
Length = 415
Score = 32.7 bits (71), Expect = 0.55
Identities = 23/69 (33%), Positives = 34/69 (49%)
Frame = -1
Query: 221 IRLHSITREHIQNLSTLGSHTTE*QRTTHSRLYTTTQDNSRKTQTQLHTHTIYTQL*KTQ 42
I +HS T HI TL T+ TH+ ++ ++R T T +HTHT+ TQ
Sbjct: 161 IHIHSDTHLHIYT-HTLTCTQTQIHTCTHTHIHIHMPTHTR-TYTHMHTHTLTC----TQ 214
Query: 41 IEYASFIYL 15
I + IY+
Sbjct: 215 IHIYTHIYM 223
>AK097452-1|BAC05058.1| 225|Homo sapiens protein ( Homo sapiens
cDNA FLJ40133 fis, clone TESTI2012231. ).
Length = 225
Score = 32.3 bits (70), Expect = 0.73
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = -3
Query: 222 HSPSLHHSRTHPKPFHLRFTHDGITTHNS 136
HSP++H++ TH H +TH TTH +
Sbjct: 25 HSPTIHNTHTHHSHTHTIWTHHTHTTHTT 53
Score = 31.1 bits (67), Expect = 1.7
Identities = 17/59 (28%), Positives = 23/59 (38%)
Frame = -1
Query: 203 TREHIQNLSTLGSHTTE*QRTTHSRLYTTTQDNSRKTQTQLHTHTIYTQL*KTQIEYAS 27
T H + T+ +H T TTH Y + T H HT T +T I + S
Sbjct: 32 THTHHSHTHTIWTHHTHTTHTTHINSYKAFTHTTHTPLTSTHLHTPLTHTPRTHITHHS 90
>AK123631-1|BAC85667.1| 207|Homo sapiens protein ( Homo sapiens
cDNA FLJ41637 fis, clone FEBRA1000030, weakly similar
to T-CELL RECEPTOR BETA CHAIN ANA 11. ).
Length = 207
Score = 30.7 bits (66), Expect = 2.2
Identities = 13/37 (35%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Frame = -2
Query: 178 PP*VHTRRNNNAQL-IPAYTQQHRTIHAKHKHNYTHT 71
P HT + +A +P YT H + H H +THT
Sbjct: 28 PTHTHTHTHTHAHCPVPPYTHAHAVCTSLHTHTHTHT 64
>AK023742-1|BAB14664.1| 1081|Homo sapiens protein ( Homo sapiens cDNA
FLJ13680 fis, clone PLACE2000007, highly similar to Homo
sapiens mRNA for KIAA0913 protein. ).
Length = 1081
Score = 30.7 bits (66), Expect = 2.2
Identities = 18/52 (34%), Positives = 23/52 (44%)
Frame = -3
Query: 336 FVTDLIGSIDVSRVSVEQAREPGRVTARRRLQQRCGQTHSPSLHHSRTHPKP 181
FV I + R+S A R A +L QRC Q + +HHS H P
Sbjct: 974 FVLQEIVMETLQRLSPAHAHNHLRAPAFHQLVQRCQQAYMQYIHHSLIHLTP 1025
>AK124784-1|BAC85948.1| 218|Homo sapiens protein ( Homo sapiens
cDNA FLJ42794 fis, clone BRAWH3007783. ).
Length = 218
Score = 29.9 bits (64), Expect = 3.9
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 4/52 (7%)
Frame = -1
Query: 212 HSITREHIQNLSTLGSH--TTE*QRTT--HSRLYTTTQDNSRKTQTQLHTHT 69
H+ T+ H+ T G+H TT + TT H++ +T T QTQLHT +
Sbjct: 117 HTGTQTHMHTHHT-GTHLCTTHHRHTTQAHTQAHTCTHHTGTHRQTQLHTRS 167
>BT007311-1|AAP35975.1| 693|Homo sapiens G protein-coupled receptor
56 protein.
Length = 693
Score = 29.5 bits (63), Expect = 5.1
Identities = 18/57 (31%), Positives = 24/57 (42%)
Frame = -3
Query: 291 VEQAREPGRVTARRRLQQRCGQTHSPSLHHSRTHPKPFHLRFTHDGITTHNSFPLIH 121
V+ A G R QR QTH SLH+ T + + + +T H FP H
Sbjct: 20 VQGAHGRGHREDFRFCSQR-NQTHRSSLHYKPTPDLRISIENSEEALTVHAPFPAAH 75
>BC146778-1|AAI46779.1| 1555|Homo sapiens PCF11, cleavage and
polyadenylation factor subunit, homolog (S. cerevisiae)
protein.
Length = 1555
Score = 29.5 bits (63), Expect = 5.1
Identities = 13/50 (26%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Frame = -3
Query: 351 GHKKLFVTDLIGSID-VSRVSVEQAREPGRVTARRRLQQRCGQTHSPSLH 205
G + + ++ D ++ S +Q +PGR + R+R + R ++ SP +H
Sbjct: 444 GSRNKIINGIVQKQDTITEESEKQGTKPGRSSTRKRSRSRSPKSRSPIIH 493
>BC065384-1|AAH65384.2| 1555|Homo sapiens PCF11, cleavage and
polyadenylation factor subunit, homolog (S. cerevisiae)
protein.
Length = 1555
Score = 29.5 bits (63), Expect = 5.1
Identities = 13/50 (26%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Frame = -3
Query: 351 GHKKLFVTDLIGSID-VSRVSVEQAREPGRVTARRRLQQRCGQTHSPSLH 205
G + + ++ D ++ S +Q +PGR + R+R + R ++ SP +H
Sbjct: 444 GSRNKIINGIVQKQDTITEESEKQGTKPGRSSTRKRSRSRSPKSRSPIIH 493
>BC008770-1|AAH08770.1| 693|Homo sapiens G protein-coupled receptor
56 protein.
Length = 693
Score = 29.5 bits (63), Expect = 5.1
Identities = 18/57 (31%), Positives = 24/57 (42%)
Frame = -3
Query: 291 VEQAREPGRVTARRRLQQRCGQTHSPSLHHSRTHPKPFHLRFTHDGITTHNSFPLIH 121
V+ A G R QR QTH SLH+ T + + + +T H FP H
Sbjct: 20 VQGAHGRGHREDFRFCSQR-NQTHRSSLHYKPTPDLRISIENSEEALTVHAPFPAAH 75
>AY358400-1|AAQ88766.1| 693|Homo sapiens GPR56 protein.
Length = 693
Score = 29.5 bits (63), Expect = 5.1
Identities = 18/57 (31%), Positives = 24/57 (42%)
Frame = -3
Query: 291 VEQAREPGRVTARRRLQQRCGQTHSPSLHHSRTHPKPFHLRFTHDGITTHNSFPLIH 121
V+ A G R QR QTH SLH+ T + + + +T H FP H
Sbjct: 20 VQGAHGRGHREDFRFCSQR-NQTHRSSLHYKPTPDLRISIENSEEALTVHAPFPAAH 75
>AJ011001-1|CAB37294.1| 687|Homo sapiens TM7XN1 protein protein.
Length = 687
Score = 29.5 bits (63), Expect = 5.1
Identities = 18/57 (31%), Positives = 24/57 (42%)
Frame = -3
Query: 291 VEQAREPGRVTARRRLQQRCGQTHSPSLHHSRTHPKPFHLRFTHDGITTHNSFPLIH 121
V+ A G R QR QTH SLH+ T + + + +T H FP H
Sbjct: 20 VQGAHGRGHREDFRFCSQR-NQTHRSSLHYKPTPDLRISIENSEEALTVHAPFPAAH 75
>AF106858-1|AAD30545.1| 693|Homo sapiens G-protein-coupled receptor
protein.
Length = 693
Score = 29.5 bits (63), Expect = 5.1
Identities = 18/57 (31%), Positives = 24/57 (42%)
Frame = -3
Query: 291 VEQAREPGRVTARRRLQQRCGQTHSPSLHHSRTHPKPFHLRFTHDGITTHNSFPLIH 121
V+ A G R QR QTH SLH+ T + + + +T H FP H
Sbjct: 20 VQGAHGRGHREDFRFCSQR-NQTHRSSLHYKPTPDLRISIENSEEALTVHAPFPAAH 75
>AF046935-1|AAC03107.1| 725|Homo sapiens PCF11p homolog protein.
Length = 725
Score = 29.5 bits (63), Expect = 5.1
Identities = 13/50 (26%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Frame = -3
Query: 351 GHKKLFVTDLIGSID-VSRVSVEQAREPGRVTARRRLQQRCGQTHSPSLH 205
G + + ++ D ++ S +Q +PGR + R+R + R ++ SP +H
Sbjct: 444 GSRNKIINGIVQKQDTITEESEKQGTKPGRSSTRKRSRSRSPKSRSPIIH 493
>AB065909-1|BAC06124.1| 693|Homo sapiens seven transmembrane helix
receptor protein.
Length = 693
Score = 29.5 bits (63), Expect = 5.1
Identities = 18/57 (31%), Positives = 24/57 (42%)
Frame = -3
Query: 291 VEQAREPGRVTARRRLQQRCGQTHSPSLHHSRTHPKPFHLRFTHDGITTHNSFPLIH 121
V+ A G R QR QTH SLH+ T + + + +T H FP H
Sbjct: 20 VQGAHGRGHREDFRFCSQR-NQTHRSSLHYKPTPDLRISIENSEEALTVHAPFPAAH 75
>AB020631-1|BAA74847.1| 1644|Homo sapiens KIAA0824 protein protein.
Length = 1644
Score = 29.5 bits (63), Expect = 5.1
Identities = 13/50 (26%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Frame = -3
Query: 351 GHKKLFVTDLIGSID-VSRVSVEQAREPGRVTARRRLQQRCGQTHSPSLH 205
G + + ++ D ++ S +Q +PGR + R+R + R ++ SP +H
Sbjct: 533 GSRNKIINGIVQKQDTITEESEKQGTKPGRSSTRKRSRSRSPKSRSPIIH 582
>BC151206-1|AAI51207.1| 1837|Homo sapiens KIAA0913 protein protein.
Length = 1837
Score = 28.7 bits (61), Expect = 9.0
Identities = 17/52 (32%), Positives = 22/52 (42%)
Frame = -3
Query: 336 FVTDLIGSIDVSRVSVEQAREPGRVTARRRLQQRCGQTHSPSLHHSRTHPKP 181
FV I + R+S A R A +L QRC Q + +HH H P
Sbjct: 1730 FVLQEIVMETLQRLSPAHAHNHLRAPAFHQLVQRCQQAYMQYIHHRLIHLTP 1781
>BC117205-1|AAI17206.1| 1101|Homo sapiens KIAA0913 protein protein.
Length = 1101
Score = 28.7 bits (61), Expect = 9.0
Identities = 17/52 (32%), Positives = 22/52 (42%)
Frame = -3
Query: 336 FVTDLIGSIDVSRVSVEQAREPGRVTARRRLQQRCGQTHSPSLHHSRTHPKP 181
FV I + R+S A R A +L QRC Q + +HH H P
Sbjct: 994 FVLQEIVMETLQRLSPAHAHNHLRAPAFHQLVQRCQQAYMQYIHHRLIHLTP 1045
>BC063694-1|AAH63694.1| 230|Homo sapiens KIAA0913 protein protein.
Length = 230
Score = 28.7 bits (61), Expect = 9.0
Identities = 17/52 (32%), Positives = 22/52 (42%)
Frame = -3
Query: 336 FVTDLIGSIDVSRVSVEQAREPGRVTARRRLQQRCGQTHSPSLHHSRTHPKP 181
FV I + R+S A R A +L QRC Q + +HH H P
Sbjct: 123 FVLQEIVMETLQRLSPAHAHNHLRAPAFHQLVQRCQQAYMQYIHHRLIHLTP 174
>BC040726-1|AAH40726.1| 349|Homo sapiens KIAA0913 protein protein.
Length = 349
Score = 28.7 bits (61), Expect = 9.0
Identities = 17/52 (32%), Positives = 22/52 (42%)
Frame = -3
Query: 336 FVTDLIGSIDVSRVSVEQAREPGRVTARRRLQQRCGQTHSPSLHHSRTHPKP 181
FV I + R+S A R A +L QRC Q + +HH H P
Sbjct: 242 FVLQEIVMETLQRLSPAHAHNHLRAPAFHQLVQRCQQAYMQYIHHRLIHLTP 293
>AK128134-1|BAC87289.1| 377|Homo sapiens member 6 (SLC12A6).
protein.
Length = 377
Score = 28.7 bits (61), Expect = 9.0
Identities = 20/63 (31%), Positives = 27/63 (42%), Gaps = 3/63 (4%)
Frame = -3
Query: 306 VSRVSVEQAREPGRVTARRRLQQR-CGQT--HSPSLHHSRTHPKPFHLRFTHDGITTHNS 136
+SR S A + +L R C T H+P HSRTHP TH + +H
Sbjct: 295 ISRYSAPHAHTCSHTSHITQLHTRPCSHTCAHTPHTIHSRTHP------LTHAHVCSHTC 348
Query: 135 FPL 127
P+
Sbjct: 349 SPI 351
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 42,938,051
Number of Sequences: 237096
Number of extensions: 789680
Number of successful extensions: 2074
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 2016
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2071
length of database: 76,859,062
effective HSP length: 83
effective length of database: 57,180,094
effective search space used: 3430805640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -