Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0040
         (431 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014296-1276|AAF50547.1|  197|Drosophila melanogaster CG7548-PA...    31   0.88 
AY118638-1|AAM50007.1| 1775|Drosophila melanogaster SD02391p pro...    29   2.0  
AE014298-586|AAF45910.1| 2779|Drosophila melanogaster CG6450-PC ...    29   2.0  
AE014296-390|AAF47594.1|  553|Drosophila melanogaster CG12361-PA...    29   2.0  
AE014296-517|AAF47693.2|  753|Drosophila melanogaster CG9973-PA ...    29   3.5  
AE014134-3261|AAF53907.2| 1320|Drosophila melanogaster CG2478-PA...    29   3.5  
L35153-1|AAA64457.1|  857|Drosophila melanogaster polycomblike n...    28   4.7  
BT023878-1|ABA81812.1| 1320|Drosophila melanogaster RE66325p pro...    28   4.7  
AY075585-1|AAL68389.1| 1043|Drosophila melanogaster SD09488p pro...    28   4.7  
AE014297-2646|AAF55654.2| 2958|Drosophila melanogaster CG5237-PA...    28   4.7  
AE013599-2620|AAF57748.2| 1043|Drosophila melanogaster CG5109-PA...    28   4.7  
AY131211-1|AAM97280.1|  608|Drosophila melanogaster scaffold pro...    28   6.2  
AY094826-1|AAM11179.1| 1266|Drosophila melanogaster LD39940p pro...    28   6.2  
AY061826-1|AAL27637.1|  388|Drosophila melanogaster GH21984p pro...    28   6.2  
AY051631-1|AAK93055.1|  506|Drosophila melanogaster GH28016p pro...    28   6.2  
AE014298-140|AAN09035.1|  237|Drosophila melanogaster CG32814-PA...    28   6.2  
AE014297-3264|AAF56090.3|  608|Drosophila melanogaster CG33193-P...    28   6.2  
AE014296-3519|AAF51708.2|  388|Drosophila melanogaster CG7605-PA...    28   6.2  
AE014134-2232|AAF53214.1|  266|Drosophila melanogaster CG5781-PA...    28   6.2  
AY069854-1|AAL39999.1|  607|Drosophila melanogaster SD10307p pro...    27   8.2  
AE014297-754|AAF54238.1|  819|Drosophila melanogaster CG11718-PA...    27   8.2  

>AE014296-1276|AAF50547.1|  197|Drosophila melanogaster CG7548-PA
           protein.
          Length = 197

 Score = 30.7 bits (66), Expect = 0.88
 Identities = 17/53 (32%), Positives = 23/53 (43%)
 Frame = -3

Query: 291 VEQAREPGRVTARRRLQQRCGQTHSPSLHHSRTHPKPFHLRFTHDGITTHNSF 133
           V+   +PG V A    QQ    +H P++ H        H+ F  DG  TH  F
Sbjct: 147 VQSYHQPGHVEAPSVYQQNAHYSHQPAVIHYSPAETVSHMSF--DGFGTHYGF 197


>AY118638-1|AAM50007.1| 1775|Drosophila melanogaster SD02391p
           protein.
          Length = 1775

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 18/52 (34%), Positives = 26/52 (50%)
 Frame = -3

Query: 288 EQAREPGRVTARRRLQQRCGQTHSPSLHHSRTHPKPFHLRFTHDGITTHNSF 133
           EQ  E     AR++ QQ+  Q H P++  S+ HP P  L F  D +   + F
Sbjct: 706 EQLSELQAQLARQQHQQQQQQHHHPAVQ-SQQHPPPASLFFGGDALAAPSPF 756


>AE014298-586|AAF45910.1| 2779|Drosophila melanogaster CG6450-PC
            protein.
          Length = 2779

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 18/52 (34%), Positives = 26/52 (50%)
 Frame = -3

Query: 288  EQAREPGRVTARRRLQQRCGQTHSPSLHHSRTHPKPFHLRFTHDGITTHNSF 133
            EQ  E     AR++ QQ+  Q H P++  S+ HP P  L F  D +   + F
Sbjct: 1710 EQLSELQAQLARQQHQQQQQQHHHPAVQ-SQQHPPPASLFFGGDALAAPSPF 1760


>AE014296-390|AAF47594.1|  553|Drosophila melanogaster CG12361-PA
           protein.
          Length = 553

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 13/35 (37%), Positives = 14/35 (40%)
 Frame = -3

Query: 225 THSPSLHHSRTHPKPFHLRFTHDGITTHNSFPLIH 121
           +H  S HH   HP   H  F H    TH   P  H
Sbjct: 34  SHPHSHHHHHHHPGAGHAHFPHPAFLTHQLPPHQH 68


>AE014296-517|AAF47693.2|  753|Drosophila melanogaster CG9973-PA
           protein.
          Length = 753

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
 Frame = -3

Query: 231 GQTHSPSLHHSRTHPKPF--HLRFTHDGITTHNSFP 130
           G  H P L H + HP P   H   ++DG  ++NS+P
Sbjct: 448 GLIHHP-LQHGQPHPIPMGMHTPTSYDGNNSNNSYP 482


>AE014134-3261|AAF53907.2| 1320|Drosophila melanogaster CG2478-PA
           protein.
          Length = 1320

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 12/47 (25%), Positives = 22/47 (46%)
 Frame = -3

Query: 273 PGRVTARRRLQQRCGQTHSPSLHHSRTHPKPFHLRFTHDGITTHNSF 133
           P R    +R  ++  + +   ++ S  HP+   +RF HD    HN +
Sbjct: 44  PSRARVLQRAFEKVRRVNHIRVNDSSGHPRSIWIRFVHDHPVEHNDW 90


>L35153-1|AAA64457.1|  857|Drosophila melanogaster polycomblike
           nuclear protein protein.
          Length = 857

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 10/35 (28%), Positives = 18/35 (51%)
 Frame = -2

Query: 115 HRTIHAKHKHNYTHTQFIHSFKRHKLNTQVLFIYC 11
           H  +      N+ HTQ + +FK+  L   + F++C
Sbjct: 525 HNMLQCCKCRNWFHTQCMQNFKKKLLRGDMFFVFC 559


>BT023878-1|ABA81812.1| 1320|Drosophila melanogaster RE66325p
           protein.
          Length = 1320

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 12/47 (25%), Positives = 22/47 (46%)
 Frame = -3

Query: 273 PGRVTARRRLQQRCGQTHSPSLHHSRTHPKPFHLRFTHDGITTHNSF 133
           P R    +R  ++  + +   ++ S  HP+   +RF HD    HN +
Sbjct: 44  PSRARVLQRAFEKVRRVNHIRVNDSSGHPRSIWIRFVHDYPVEHNDW 90


>AY075585-1|AAL68389.1| 1043|Drosophila melanogaster SD09488p
           protein.
          Length = 1043

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 10/35 (28%), Positives = 18/35 (51%)
 Frame = -2

Query: 115 HRTIHAKHKHNYTHTQFIHSFKRHKLNTQVLFIYC 11
           H  +      N+ HTQ + +FK+  L   + F++C
Sbjct: 525 HNMLQCCKCRNWFHTQCMQNFKKKLLRGDMFFVFC 559


>AE014297-2646|AAF55654.2| 2958|Drosophila melanogaster CG5237-PA
            protein.
          Length = 2958

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 11/27 (40%), Positives = 12/27 (44%)
 Frame = -3

Query: 222  HSPSLHHSRTHPKPFHLRFTHDGITTH 142
            H P  HH   HP P H    H G + H
Sbjct: 1365 HHPHGHHPYPHPHPHHHPHHHAGSSAH 1391


>AE013599-2620|AAF57748.2| 1043|Drosophila melanogaster CG5109-PA
           protein.
          Length = 1043

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 10/35 (28%), Positives = 18/35 (51%)
 Frame = -2

Query: 115 HRTIHAKHKHNYTHTQFIHSFKRHKLNTQVLFIYC 11
           H  +      N+ HTQ + +FK+  L   + F++C
Sbjct: 525 HNMLQCCKCRNWFHTQCMQNFKKKLLRGDMFFVFC 559


>AY131211-1|AAM97280.1|  608|Drosophila melanogaster scaffold
           protein salvador protein.
          Length = 608

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 17/45 (37%), Positives = 21/45 (46%)
 Frame = -3

Query: 276 EPGRVTARRRLQQRCGQTHSPSLHHSRTHPKPFHLRFTHDGITTH 142
           +P    ARR   Q   Q HS S  HS  HP   H+R +H  +  H
Sbjct: 89  QPDYYHARRAQSQMPLQQHSHSHPHSLPHPSHPHVR-SHPPLPPH 132


>AY094826-1|AAM11179.1| 1266|Drosophila melanogaster LD39940p
           protein.
          Length = 1266

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = -3

Query: 288 EQAREPGRVTARRRLQQRCGQTHSPSLHHSRTHPKP 181
           EQ R+  R   +++ QQ+  Q   P  HH+R HP P
Sbjct: 778 EQRRKERRERRQQQQQQQQQQQFQP--HHARRHPPP 811


>AY061826-1|AAL27637.1|  388|Drosophila melanogaster GH21984p
           protein.
          Length = 388

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -3

Query: 240 QRCGQTHSPSLHHSRTHPKPFHLRFTH 160
           Q+  Q H+PS HH  +H +P H    H
Sbjct: 80  QQQQQHHNPSHHHQSSHHQPSHHHHHH 106


>AY051631-1|AAK93055.1|  506|Drosophila melanogaster GH28016p
           protein.
          Length = 506

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = -3

Query: 288 EQAREPGRVTARRRLQQRCGQTHSPSLHHSRTHPKP 181
           EQ R+  R   +++ QQ+  Q   P  HH+R HP P
Sbjct: 18  EQRRKERRERRQQQQQQQQQQQFQP--HHARRHPPP 51


>AE014298-140|AAN09035.1|  237|Drosophila melanogaster CG32814-PA
           protein.
          Length = 237

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 16/48 (33%), Positives = 22/48 (45%)
 Frame = -1

Query: 212 HSITREHIQNLSTLGSHTTE*QRTTHSRLYTTTQDNSRKTQTQLHTHT 69
           H+ T     N +T  +H T    TTH+   TTT + +  T T   T T
Sbjct: 124 HTTTTTTTHNTTTTTTHNTT-TTTTHNTTTTTTHNTTTHTTTTTTTTT 170


>AE014297-3264|AAF56090.3|  608|Drosophila melanogaster CG33193-PA
           protein.
          Length = 608

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 17/45 (37%), Positives = 21/45 (46%)
 Frame = -3

Query: 276 EPGRVTARRRLQQRCGQTHSPSLHHSRTHPKPFHLRFTHDGITTH 142
           +P    ARR   Q   Q HS S  HS  HP   H+R +H  +  H
Sbjct: 89  QPDYYHARRAQSQMPLQQHSHSHPHSLPHPSHPHVR-SHPPLPPH 132


>AE014296-3519|AAF51708.2|  388|Drosophila melanogaster CG7605-PA
           protein.
          Length = 388

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -3

Query: 240 QRCGQTHSPSLHHSRTHPKPFHLRFTH 160
           Q+  Q H+PS HH  +H +P H    H
Sbjct: 80  QQQQQHHNPSHHHQSSHHQPSHHHHHH 106


>AE014134-2232|AAF53214.1|  266|Drosophila melanogaster CG5781-PA
           protein.
          Length = 266

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = -3

Query: 228 QTHSPSLHHSRTHPKPFHL 172
           Q  +P +  S THPKPFHL
Sbjct: 179 QPFTPLVKSSFTHPKPFHL 197


>AY069854-1|AAL39999.1|  607|Drosophila melanogaster SD10307p
           protein.
          Length = 607

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 17/45 (37%), Positives = 21/45 (46%)
 Frame = -3

Query: 276 EPGRVTARRRLQQRCGQTHSPSLHHSRTHPKPFHLRFTHDGITTH 142
           +P    ARR   Q   Q HS S  HS  HP   H+R +H  +  H
Sbjct: 89  QPDYYHARRAQSQMPLQQHSHSHPHSLPHPAHPHVR-SHPPLPPH 132


>AE014297-754|AAF54238.1|  819|Drosophila melanogaster CG11718-PA
           protein.
          Length = 819

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 6/45 (13%)
 Frame = -3

Query: 255 RRRLQQR-CGQTHSPSLHH-----SRTHPKPFHLRFTHDGITTHN 139
           R+RLQQ+   Q H P L H     SRT  +P      H+G+ T++
Sbjct: 507 RQRLQQQQLQQQHEPHLQHQQIARSRTQSQPQKQPTMHEGVLTNS 551


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,680,552
Number of Sequences: 53049
Number of extensions: 241773
Number of successful extensions: 1283
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1281
length of database: 24,988,368
effective HSP length: 78
effective length of database: 20,850,546
effective search space used: 1355285490
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)