Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0040
(431 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U88182-1|AAB42309.1| 101|Caenorhabditis elegans Hypothetical pr... 29 1.1
U64857-15|AAC25858.1| 470|Caenorhabditis elegans Hypothetical p... 28 2.5
AC006805-1|AAK68515.1| 129|Caenorhabditis elegans Hypothetical ... 28 2.5
Z78543-5|CAH10796.1| 1453|Caenorhabditis elegans Hypothetical pr... 28 3.3
Z78543-4|CAB01754.1| 1785|Caenorhabditis elegans Hypothetical pr... 28 3.3
Z78543-3|CAB01755.2| 772|Caenorhabditis elegans Hypothetical pr... 28 3.3
AL117195-12|CAB60765.1| 425|Caenorhabditis elegans Hypothetical... 27 4.4
AL031635-5|CAA21042.1| 1113|Caenorhabditis elegans Hypothetical ... 27 4.4
Z49207-3|CAA89071.1| 927|Caenorhabditis elegans Hypothetical pr... 27 5.8
AF026210-3|AAB71286.3| 382|Caenorhabditis elegans Hypothetical ... 27 5.8
U58752-2|AAB00665.1| 571|Caenorhabditis elegans Hypothetical pr... 27 7.7
>U88182-1|AAB42309.1| 101|Caenorhabditis elegans Hypothetical
protein C53C11.4 protein.
Length = 101
Score = 29.5 bits (63), Expect = 1.1
Identities = 15/43 (34%), Positives = 18/43 (41%)
Frame = -3
Query: 276 EPGRVTARRRLQQRCGQTHSPSLHHSRTHPKPFHLRFTHDGIT 148
EP + L+ G+TH HH TH H TH G T
Sbjct: 17 EPSGKFLKMLLRDLRGETHRGETHHGETHRGEAHRGETHRGET 59
>U64857-15|AAC25858.1| 470|Caenorhabditis elegans Hypothetical
protein C37C3.1 protein.
Length = 470
Score = 28.3 bits (60), Expect = 2.5
Identities = 16/37 (43%), Positives = 22/37 (59%)
Frame = +2
Query: 230 PQRCWRRRRAVTRPGSRACSTLTRETSMLPMRSVTNN 340
P R W R R+ TR +++ STLT S P RS +N+
Sbjct: 372 PNRNWTRARSRTRSQAKSSSTLTWPLS--PSRSRSNS 406
>AC006805-1|AAK68515.1| 129|Caenorhabditis elegans Hypothetical
protein Y54B9A.1 protein.
Length = 129
Score = 28.3 bits (60), Expect = 2.5
Identities = 14/35 (40%), Positives = 16/35 (45%)
Frame = -3
Query: 252 RRLQQRCGQTHSPSLHHSRTHPKPFHLRFTHDGIT 148
RR + R G+TH H TH H TH G T
Sbjct: 40 RRGETRRGETHRGETHRGETHRGETHRGETHRGET 74
>Z78543-5|CAH10796.1| 1453|Caenorhabditis elegans Hypothetical
protein F29G6.3c protein.
Length = 1453
Score = 27.9 bits (59), Expect = 3.3
Identities = 13/39 (33%), Positives = 18/39 (46%)
Frame = -3
Query: 237 RCGQTHSPSLHHSRTHPKPFHLRFTHDGITTHNSFPLIH 121
R G HS + HHS H THD +T + L++
Sbjct: 142 RSGSHHSVASHHSHHSQHSHHSALTHDSESTISEGTLVN 180
>Z78543-4|CAB01754.1| 1785|Caenorhabditis elegans Hypothetical
protein F29G6.3b protein.
Length = 1785
Score = 27.9 bits (59), Expect = 3.3
Identities = 13/39 (33%), Positives = 18/39 (46%)
Frame = -3
Query: 237 RCGQTHSPSLHHSRTHPKPFHLRFTHDGITTHNSFPLIH 121
R G HS + HHS H THD +T + L++
Sbjct: 142 RSGSHHSVASHHSHHSQHSHHSALTHDSESTISEGTLVN 180
>Z78543-3|CAB01755.2| 772|Caenorhabditis elegans Hypothetical
protein F29G6.3a protein.
Length = 772
Score = 27.9 bits (59), Expect = 3.3
Identities = 13/39 (33%), Positives = 18/39 (46%)
Frame = -3
Query: 237 RCGQTHSPSLHHSRTHPKPFHLRFTHDGITTHNSFPLIH 121
R G HS + HHS H THD +T + L++
Sbjct: 142 RSGSHHSVASHHSHHSQHSHHSALTHDSESTISEGTLVN 180
>AL117195-12|CAB60765.1| 425|Caenorhabditis elegans Hypothetical
protein Y57A10A.19 protein.
Length = 425
Score = 27.5 bits (58), Expect = 4.4
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = -3
Query: 288 EQAREPGRVTARRRLQQRCGQTHSPSLHHSRTHPKPFHLRFTHD 157
E+ R P T RRR +R Q SPS+ ++ + R HD
Sbjct: 296 ERRRSPEDRTVRRRSPERRRQQRSPSVERRKSPQRRDERRRRHD 339
>AL031635-5|CAA21042.1| 1113|Caenorhabditis elegans Hypothetical
protein Y47D3B.7 protein.
Length = 1113
Score = 27.5 bits (58), Expect = 4.4
Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 7/48 (14%)
Frame = +2
Query: 221 WVWPQR-CWRRRRAVTRPGSRAC------STLTRETSMLPMRSVTNNF 343
W+W R RRRR+ T+P S C + L E L + +T NF
Sbjct: 633 WLWIGRYIARRRRSTTKPVSVVCRSHAQTAVLYHEIHQLHLMGITGNF 680
>Z49207-3|CAA89071.1| 927|Caenorhabditis elegans Hypothetical
protein R07E3.6 protein.
Length = 927
Score = 27.1 bits (57), Expect = 5.8
Identities = 16/35 (45%), Positives = 19/35 (54%)
Frame = -1
Query: 161 TTE*QRTTHSRLYTTTQDNSRKTQTQLHTHTIYTQ 57
TTE TT ++ TTT S T TQL T T T+
Sbjct: 333 TTEEITTTTTKAPTTTTTQSTTTTTQLPTTTTTTE 367
>AF026210-3|AAB71286.3| 382|Caenorhabditis elegans Hypothetical
protein F48A11.4 protein.
Length = 382
Score = 27.1 bits (57), Expect = 5.8
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = +2
Query: 248 RRRAVTRPGSRACSTLTRETSMLPMRS 328
R R +TRP S C+ S P+RS
Sbjct: 284 RMRVITRPSSVICTVFAVNNSQAPLRS 310
>U58752-2|AAB00665.1| 571|Caenorhabditis elegans Hypothetical
protein B0218.2 protein.
Length = 571
Score = 26.6 bits (56), Expect = 7.7
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = -3
Query: 231 GQTHSPSLHHSRTHPKPFHLRFTHDGI 151
G P + T KP HLRF+H G+
Sbjct: 238 GSIRIPCAYTGTTGIKPSHLRFSHRGV 264
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,934,856
Number of Sequences: 27780
Number of extensions: 117632
Number of successful extensions: 404
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 368
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 401
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 724655464
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -