Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0040
         (431 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g24625.1 68414.m03099 zinc finger (C2H2 type) family protein ...    31   0.34 
At1g73830.1 68414.m08548 basic helix-loop-helix (bHLH) family pr...    28   3.1  
At3g53560.1 68416.m05914 chloroplast lumen common family protein       27   4.1  
At1g17240.1 68414.m02100 leucine-rich repeat family protein cont...    27   4.1  
At4g11720.1 68417.m01870 hypothetical protein                          27   5.5  
At3g56040.1 68416.m06226 expressed protein                             27   5.5  
At1g17250.1 68414.m02101 leucine-rich repeat family protein cont...    27   5.5  
At3g46800.1 68416.m05080 DC1 domain-containing protein contains ...    27   7.2  
At2g19660.1 68415.m02297 DC1 domain-containing protein contains ...    27   7.2  
At2g37100.1 68415.m04552 protamine P1 family protein contains Pf...    26   9.6  

>At1g24625.1 68414.m03099 zinc finger (C2H2 type) family protein
           (ZFP7) identical to zinc finger protein, ZFP7
           gi|790685|gb|AAA87303; contains Pfam domain, PF00096:
           Zinc finger, C2H2 type
          Length = 209

 Score = 31.1 bits (67), Expect = 0.34
 Identities = 15/34 (44%), Positives = 19/34 (55%)
 Frame = -3

Query: 228 QTHSPSLHHSRTHPKPFHLRFTHDGITTHNSFPL 127
           Q HS  LHH+ + P+P   RF H G    N+ PL
Sbjct: 115 QAHSGLLHHTLSQPQPLVSRFHHQGY-FGNTVPL 147


>At1g73830.1 68414.m08548 basic helix-loop-helix (bHLH) family
           protein contains Pfam profile: PF00010 helix-loop-helix
           DNA-binding domain
          Length = 261

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = -3

Query: 219 SPSLHHSRTHPKPFHLRFTHDGITTHNSFP 130
           S +LHH +T P PF      D +  HN FP
Sbjct: 24  SNTLHHFQTFPPPFSSSL--DSLFFHNQFP 51


>At3g53560.1 68416.m05914 chloroplast lumen common family protein
          Length = 340

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = -3

Query: 213 SLHHSRTHPKPFHLRFTHDGITTHNSFP 130
           SL   + H +PFHL FTH   T+ ++FP
Sbjct: 3   SLGKLQLHHQPFHLSFTH---TSSSTFP 27


>At1g17240.1 68414.m02100 leucine-rich repeat family protein
           contains leucine rich-repeat (LRR) domains Pfam:PF00560,
           INTERPRO:IPR001611; similar to Hcr2-0B [Lycopersicon
           esculentum] gi|3894387|gb|AAC78593
          Length = 729

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -2

Query: 196 NTSKTFPP*VHTRRNNNAQLIPAYTQQHRTIH 101
           N   +FPP ++ RRNN    IP    Q + +H
Sbjct: 572 NKLYSFPPTIYIRRNNLTGSIPVEVGQLKVLH 603


>At4g11720.1 68417.m01870 hypothetical protein
          Length = 658

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 11/42 (26%), Positives = 20/42 (47%)
 Frame = -2

Query: 166 HTRRNNNAQLIPAYTQQHRTIHAKHKHNYTHTQFIHSFKRHK 41
           H   +++ +L+P+        H  HKH + H     + +RHK
Sbjct: 551 HFDLDHHRRLLPSRADVVNRHHHHHKHRHHHNHHRRTHQRHK 592


>At3g56040.1 68416.m06226 expressed protein
          Length = 883

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = -3

Query: 219 SPSLHHSRTHPKPFHLRFTHDGITTHNSFPLIH 121
           SP LHH + H   FH R T    T+  SF  +H
Sbjct: 7   SPILHHPQNHLSLFHFRTT----TSPRSFSSLH 35


>At1g17250.1 68414.m02101 leucine-rich repeat family protein
           contains leucine rich-repeat (LRR) domains Pfam:PF00560,
           INTERPRO:IPR001611; similar to Hcr2-0B [Lycopersicon
           esculentum] gi|3894387|gb|AAC78593
          Length = 756

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = -2

Query: 184 TFPP*VHTRRNNNAQLIPAYTQQHRTIHA-KHKHNY 80
           + PP ++ RRNN    IP    Q + +H  +  HNY
Sbjct: 585 SLPPGIYIRRNNLKGSIPIEVGQLKVLHVLELSHNY 620


>At3g46800.1 68416.m05080 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 682

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 11/25 (44%), Positives = 12/25 (48%)
 Frame = -3

Query: 246 LQQRCGQTHSPSLHHSRTHPKPFHL 172
           L  RC   + P LH S  HP  F L
Sbjct: 495 LDVRCSSIYEPFLHESHPHPLYFSL 519


>At2g19660.1 68415.m02297 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 662

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 11/26 (42%), Positives = 12/26 (46%)
 Frame = -3

Query: 246 LQQRCGQTHSPSLHHSRTHPKPFHLR 169
           L  RCG    P +H S  HP  F  R
Sbjct: 469 LDVRCGSIREPLVHQSHQHPLYFSKR 494


>At2g37100.1 68415.m04552 protamine P1 family protein contains Pfam
           PF00260: Protamine P1
          Length = 297

 Score = 26.2 bits (55), Expect = 9.6
 Identities = 14/32 (43%), Positives = 16/32 (50%)
 Frame = -3

Query: 288 EQAREPGRVTARRRLQQRCGQTHSPSLHHSRT 193
           E AR  G  T RRR  +RCG   +    HS T
Sbjct: 79  ETARVSGGATERRRQSRRCGWVKNAFPCHSFT 110


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,363,892
Number of Sequences: 28952
Number of extensions: 106435
Number of successful extensions: 363
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 352
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 362
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 685039728
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)