Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0039
         (395 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggeri...    23   0.83 
EF222291-1|ABN79651.1|  374|Tribolium castaneum cardioactive pep...    21   3.4  
AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosin...    21   4.4  
AY873916-1|AAW67572.1|  377|Tribolium castaneum chitinase 6 prot...    21   5.9  
AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    21   5.9  
AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia or...    21   5.9  
AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head orthol...    20   7.7  

>EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggering
           hormone receptorisoform B protein.
          Length = 451

 Score = 23.4 bits (48), Expect = 0.83
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +3

Query: 120 SWFCMGLYSSAILAVSVY 173
           +WF   L++S ILA++ Y
Sbjct: 194 AWFIAALFTSPILAITQY 211


>EF222291-1|ABN79651.1|  374|Tribolium castaneum cardioactive
           peptide receptor 1 protein.
          Length = 374

 Score = 21.4 bits (43), Expect = 3.4
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +3

Query: 105 YIVQYSWFCMGLYSSAIL 158
           Y++  +WF   LYS  IL
Sbjct: 141 YLILAAWFFSALYSLPIL 158


>AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosine
           kinase Torso-likeprotein protein.
          Length = 803

 Score = 21.0 bits (42), Expect = 4.4
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = -1

Query: 206 RMAASRNPAPRIYTDCENC*TI*PHTKPT 120
           R+A   N +P +Y    NC    P  +PT
Sbjct: 712 RLARPANCSPDLYAVMLNCWKECPKNRPT 740


>AY873916-1|AAW67572.1|  377|Tribolium castaneum chitinase 6
           protein.
          Length = 377

 Score = 20.6 bits (41), Expect = 5.9
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -2

Query: 58  SMWVGIDVKKSILL 17
           ++WVG D  KS+ L
Sbjct: 320 TLWVGFDNPKSVAL 333


>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 20.6 bits (41), Expect = 5.9
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = +2

Query: 254 RFLRTVMTNQQPRKERSEIHYLK 322
           R LRT  TN Q  +   E H+ K
Sbjct: 5   RRLRTAYTNTQLLELEKEFHFNK 27


>AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 477

 Score = 20.6 bits (41), Expect = 5.9
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = +2

Query: 254 RFLRTVMTNQQPRKERSEIHYLK 322
           R LRT  TN Q  +   E H+ K
Sbjct: 136 RRLRTAYTNTQLLELEKEFHFNK 158


>AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head
           orthologue protein.
          Length = 431

 Score = 20.2 bits (40), Expect = 7.7
 Identities = 6/12 (50%), Positives = 8/12 (66%)
 Frame = +1

Query: 220 WPMYRRNPLNWQ 255
           +P YR+N   WQ
Sbjct: 174 FPFYRQNQQRWQ 185


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 86,329
Number of Sequences: 336
Number of extensions: 1695
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  8435920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)