Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0039
         (395 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBPB2B2.10c |||galactose-1-phosphate uridylyltransferase |Schiz...    25   4.3  
SPBC32F12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyce...    25   5.6  
SPBC13G1.15c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual       25   5.6  
SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit |Sch...    24   7.4  
SPCC1840.03 |sal3|pse1|karyopherin Sal3|Schizosaccharomyces pomb...    24   9.8  
SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase Ubp12|Schizo...    24   9.8  
SPCC1259.12c |||Ran GTPase binding protein |Schizosaccharomyces ...    24   9.8  

>SPBPB2B2.10c |||galactose-1-phosphate uridylyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 369

 Score = 25.0 bits (52), Expect = 4.3
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +3

Query: 90  IQGNNYIVQYSWFCMGLYSSAILAVSVYSWC 182
           + G+N  V+ SWF M  Y   + + +V  +C
Sbjct: 304 LYGSNEEVENSWFHMHFYPPLLRSATVKKFC 334


>SPBC32F12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 340

 Score = 24.6 bits (51), Expect = 5.6
 Identities = 11/33 (33%), Positives = 14/33 (42%), Gaps = 3/33 (9%)
 Frame = +3

Query: 123 WFCMGLYSSAILAVSVYSW---CRISACCHSYC 212
           W C   Y   + ++S  SW   CR S   H  C
Sbjct: 15  WICYEEYDKKLCSLSNDSWRRPCRCSLIAHESC 47


>SPBC13G1.15c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 111

 Score = 24.6 bits (51), Expect = 5.6
 Identities = 12/43 (27%), Positives = 21/43 (48%)
 Frame = +3

Query: 87  IIQGNNYIVQYSWFCMGLYSSAILAVSVYSWCRISACCHSYCS 215
           +++ N Y +    F + +    +L V +  + RI  CC S CS
Sbjct: 17  LLEANKYKLSEITFKVYISIRRLLIVVITLYRRIVECCASLCS 59


>SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1006

 Score = 24.2 bits (50), Expect = 7.4
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +3

Query: 120 SWFCMGLYSSAILAVSVYSWCRISACCHSYCSSMANV 230
           S F +G Y++AI +  VYS    S+C       ++N+
Sbjct: 72  SAFLLGSYTAAISSPGVYSMMTPSSCLSLLNPLLSNI 108


>SPCC1840.03 |sal3|pse1|karyopherin Sal3|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1095

 Score = 23.8 bits (49), Expect = 9.8
 Identities = 13/48 (27%), Positives = 21/48 (43%), Gaps = 2/48 (4%)
 Frame = -1

Query: 305  HFFPFLAAGL--SSPFLGTCQFRGLRRYIGHGGTVRMAASRNPAPRIY 168
            HF P+LA G+  S P +      G+     HGG +      +  P ++
Sbjct: 909  HFLPYLAEGIQSSEPEIRQAASYGIGVAAQHGGELYAEICSSALPALF 956


>SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase
           Ubp12|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 979

 Score = 23.8 bits (49), Expect = 9.8
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = +3

Query: 84  EIIQGNNYIVQYSWF 128
           E+ Q +NYI+ YSW+
Sbjct: 71  ELGQVDNYILSYSWY 85


>SPCC1259.12c |||Ran GTPase binding protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 486

 Score = 23.8 bits (49), Expect = 9.8
 Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
 Frame = -3

Query: 285 CWFVITVLRNLPVQRIASVHWPWRNSKN-GSKQKSGTKNIH*LRELLNYITPYKTNY 118
           C  +I  LR L   ++  V    R +K+ G+KQ S  +++  L+ L+NY      +Y
Sbjct: 331 CPDLIMSLRFLRFLQLVKVTHDQRLTKSKGTKQISQEEDLRILQPLMNYAQELSNDY 387


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,476,890
Number of Sequences: 5004
Number of extensions: 27073
Number of successful extensions: 71
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 71
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 132093910
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)