Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0039
         (395 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_16207| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   0.78 
SB_34124| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.8  
SB_50935| Best HMM Match : TPR_2 (HMM E-Value=0.00065)                 26   9.6  
SB_36751| Best HMM Match : Exo_endo_phos (HMM E-Value=2e-12)           26   9.6  

>SB_16207| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 163

 Score = 29.9 bits (64), Expect = 0.78
 Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
 Frame = +3

Query: 123 WFCMGLYSSAILAVS--VYSWCRISAC 197
           WFCMG Y + + AV+  V S+CR   C
Sbjct: 109 WFCMGYYVNGLKAVAKRVCSYCRKYGC 135


>SB_34124| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 468

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = -1

Query: 224 GHGGTVRMAASRNPA-PRIYTDCENC*TI*PHTKP 123
           G+GG +  A + N + PR  + CEN   I  HTKP
Sbjct: 409 GYGGPLTCANNENTSIPRCSSRCENVVHIIDHTKP 443


>SB_50935| Best HMM Match : TPR_2 (HMM E-Value=0.00065)
          Length = 1033

 Score = 26.2 bits (55), Expect = 9.6
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = -1

Query: 239 LRRYIGHGGTVRMAASRNPAPRI 171
           +RR+    G +R AASRNP P I
Sbjct: 424 IRRWTHDYGWLRPAASRNPVPSI 446


>SB_36751| Best HMM Match : Exo_endo_phos (HMM E-Value=2e-12)
          Length = 906

 Score = 26.2 bits (55), Expect = 9.6
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = +3

Query: 117 YSWFCMGLYSSAILAVSVYSWCRISACCHSYCSSMANVP 233
           + WFC G  S  +L+  V +   +++ CH + S +   P
Sbjct: 731 HQWFCHGWLSPVVLSRVVVTSGFVTSGCHEWLSLVVLSP 769


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,782,268
Number of Sequences: 59808
Number of extensions: 195095
Number of successful extensions: 462
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 444
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 462
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 690807992
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)