Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0039
         (395 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L38852-1|AAL31361.1|  102|Homo sapiens signal peptidase 12kDa su...    62   5e-10
BC000884-1|AAH00884.1|  104|Homo sapiens signal peptidase comple...    59   5e-09
BC009930-1|AAH09930.1|  250|Homo sapiens FRAG1 protein protein.        29   5.6  
AY373030-1|AAQ75733.1|  254|Homo sapiens FGF receptor activating...    29   5.6  
AF159615-1|AAF12755.1|  315|Homo sapiens FGF receptor activating...    29   5.6  
BC016742-1|AAH16742.1|  199|Homo sapiens DnaJ (Hsp40) homolog, s...    29   7.4  
BC012621-1|AAH12621.1|  195|Homo sapiens KLRG1 protein protein.        29   7.4  
AF368276-1|AAK60571.1|  199|Homo sapiens beta cysteine string pr...    29   7.4  
AF097358-1|AAD03719.1|  189|Homo sapiens mast cell function-asso...    29   7.4  
AF081675-1|AAC32200.1|  189|Homo sapiens ITIM-containing recepto...    29   7.4  
AF034952-1|AAC34731.1|  189|Homo sapiens mast cell function-asso...    29   7.4  

>L38852-1|AAL31361.1|  102|Homo sapiens signal peptidase 12kDa
           subunit protein.
          Length = 102

 Score = 62.5 bits (145), Expect = 5e-10
 Identities = 27/69 (39%), Positives = 41/69 (59%), Gaps = 1/69 (1%)
 Frame = +1

Query: 49  PT*ITSDKQK-QEKLYRAIITLFSIVGFVWGYIVQQFSQSVYXXXXXXXXXXXXTVPPWP 225
           PT +    QK  E++++ I    +IVGF++GY+ +QF  +VY            T+PPWP
Sbjct: 9   PTQMDYKGQKLAEQMFQGIYLFSAIVGFIYGYVAEQFGWTVYIVMAGFAFSCLLTLPPWP 68

Query: 226 MYRRNPLNW 252
           +YRR+PL W
Sbjct: 69  IYRRHPLKW 77


>BC000884-1|AAH00884.1|  104|Homo sapiens signal peptidase complex
           subunit 1 homolog (S. cerevisiae) protein.
          Length = 104

 Score = 59.3 bits (137), Expect = 5e-09
 Identities = 28/71 (39%), Positives = 42/71 (59%), Gaps = 3/71 (4%)
 Frame = +1

Query: 49  PT*ITSDKQK-QEKLYRAIITLFSIVGFVWGYIVQQFSQSVY--XXXXXXXXXXXXTVPP 219
           PT +    QK  E++++ II   +IVGF++GY+ +QF  +VY              T+PP
Sbjct: 9   PTQMDYKGQKLAEQMFQGIILFSAIVGFIYGYVAEQFGWTVYIVMAGFAFSCLAQLTLPP 68

Query: 220 WPMYRRNPLNW 252
           WP+YRR+PL W
Sbjct: 69  WPIYRRHPLKW 79


>BC009930-1|AAH09930.1|  250|Homo sapiens FRAG1 protein protein.
          Length = 250

 Score = 29.1 bits (62), Expect = 5.6
 Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
 Frame = +3

Query: 42  IPTHIDYVGQAKAGEIIQGNNYIVQYSW-FCMGLYSSAILAVSVYSWCRISACCHSYCS 215
           +P ++  V  A  GE+ Q      +Y W FC+GL+S+    V+   W    +C  S CS
Sbjct: 56  VPNYLPSVSSAIGGEVPQ------RYVWRFCIGLHSAPRFLVAFAYWNHYLSCT-SPCS 107


>AY373030-1|AAQ75733.1|  254|Homo sapiens FGF receptor activating
           protein 1 isoform protein.
          Length = 254

 Score = 29.1 bits (62), Expect = 5.6
 Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
 Frame = +3

Query: 42  IPTHIDYVGQAKAGEIIQGNNYIVQYSW-FCMGLYSSAILAVSVYSWCRISACCHSYCS 215
           +P ++  V  A  GE+ Q      +Y W FC+GL+S+    V+   W    +C  S CS
Sbjct: 56  VPNYLPSVSSAIGGEVPQ------RYVWRFCIGLHSAPRFLVAFAYWNHYLSCT-SPCS 107


>AF159615-1|AAF12755.1|  315|Homo sapiens FGF receptor activating
           protein 1 protein.
          Length = 315

 Score = 29.1 bits (62), Expect = 5.6
 Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
 Frame = +3

Query: 42  IPTHIDYVGQAKAGEIIQGNNYIVQYSW-FCMGLYSSAILAVSVYSWCRISACCHSYCS 215
           +P ++  V  A  GE+ Q      +Y W FC+GL+S+    V+   W    +C  S CS
Sbjct: 117 VPNYLPSVSSAIGGEVPQ------RYVWRFCIGLHSAPRFLVAFAYWNHYLSCT-SPCS 168


>BC016742-1|AAH16742.1|  199|Homo sapiens DnaJ (Hsp40) homolog,
           subfamily C, member 5 beta protein.
          Length = 199

 Score = 28.7 bits (61), Expect = 7.4
 Identities = 11/38 (28%), Positives = 16/38 (42%)
 Frame = +3

Query: 99  NNYIVQYSWFCMGLYSSAILAVSVYSWCRISACCHSYC 212
           N Y +  SW+   L+    L    Y  C +  CC+  C
Sbjct: 100 NTYFMLSSWWAKALFVIVGLLTGCYFCCCLCCCCNCCC 137


>BC012621-1|AAH12621.1|  195|Homo sapiens KLRG1 protein protein.
          Length = 195

 Score = 28.7 bits (61), Expect = 7.4
 Identities = 17/73 (23%), Positives = 34/73 (46%)
 Frame = +3

Query: 15  FSKMDFFTSIPTHIDYVGQAKAGEIIQGNNYIVQYSWFCMGLYSSAILAVSVYSWCRISA 194
           +S ++  T+     DY  Q K+       + +V  +   +GL ++ +L+V +Y W     
Sbjct: 7   YSMLELPTATQAQNDYGPQQKSSSSRPSCSCLVAIA---LGLLTAVLLSVLLYQWILCQG 63

Query: 195 CCHSYCSSMANVP 233
             +S C+S  + P
Sbjct: 64  SNYSTCASCPSCP 76


>AF368276-1|AAK60571.1|  199|Homo sapiens beta cysteine string
           protein protein.
          Length = 199

 Score = 28.7 bits (61), Expect = 7.4
 Identities = 11/38 (28%), Positives = 16/38 (42%)
 Frame = +3

Query: 99  NNYIVQYSWFCMGLYSSAILAVSVYSWCRISACCHSYC 212
           N Y +  SW+   L+    L    Y  C +  CC+  C
Sbjct: 100 NTYFMLSSWWAKALFVIVGLLTGCYFCCCLCCCCNCCC 137


>AF097358-1|AAD03719.1|  189|Homo sapiens mast cell
           function-associated antigen homolog protein.
          Length = 189

 Score = 28.7 bits (61), Expect = 7.4
 Identities = 17/73 (23%), Positives = 34/73 (46%)
 Frame = +3

Query: 15  FSKMDFFTSIPTHIDYVGQAKAGEIIQGNNYIVQYSWFCMGLYSSAILAVSVYSWCRISA 194
           +S ++  T+     DY  Q K+       + +V  +   +GL ++ +L+V +Y W     
Sbjct: 7   YSMLELPTATQAQNDYGPQQKSSSSRPSCSCLVAIA---LGLLTAVLLSVLLYQWILCQG 63

Query: 195 CCHSYCSSMANVP 233
             +S C+S  + P
Sbjct: 64  SNYSTCASCPSCP 76


>AF081675-1|AAC32200.1|  189|Homo sapiens ITIM-containing receptor
           MAFA-L protein.
          Length = 189

 Score = 28.7 bits (61), Expect = 7.4
 Identities = 17/73 (23%), Positives = 34/73 (46%)
 Frame = +3

Query: 15  FSKMDFFTSIPTHIDYVGQAKAGEIIQGNNYIVQYSWFCMGLYSSAILAVSVYSWCRISA 194
           +S ++  T+     DY  Q K+       + +V  +   +GL ++ +L+V +Y W     
Sbjct: 7   YSMLELPTATQAQNDYGPQQKSSSSRPSCSCLVAIA---LGLLTAVLLSVLLYQWILCQG 63

Query: 195 CCHSYCSSMANVP 233
             +S C+S  + P
Sbjct: 64  SNYSTCASCPSCP 76


>AF034952-1|AAC34731.1|  189|Homo sapiens mast cell
           function-associated antigen protein.
          Length = 189

 Score = 28.7 bits (61), Expect = 7.4
 Identities = 17/73 (23%), Positives = 34/73 (46%)
 Frame = +3

Query: 15  FSKMDFFTSIPTHIDYVGQAKAGEIIQGNNYIVQYSWFCMGLYSSAILAVSVYSWCRISA 194
           +S ++  T+     DY  Q K+       + +V  +   +GL ++ +L+V +Y W     
Sbjct: 7   YSMLELPTATQAQNDYGPQQKSSSSKPSCSCLVAIT---LGLLTAVLLSVLLYQWILCQG 63

Query: 195 CCHSYCSSMANVP 233
             +S C+S  + P
Sbjct: 64  SNYSTCASCPSCP 76


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 51,090,305
Number of Sequences: 237096
Number of extensions: 943705
Number of successful extensions: 2043
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 2020
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2041
length of database: 76,859,062
effective HSP length: 82
effective length of database: 57,417,190
effective search space used: 2813442310
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)