Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0039
         (395 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF043693-5|AAB97532.1|  105|Caenorhabditis elegans Hypothetical ...    48   2e-06
U41270-5|AAA82442.2|  364|Caenorhabditis elegans Hypothetical pr...    27   3.7  
U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical pr...    26   8.5  

>AF043693-5|AAB97532.1|  105|Caenorhabditis elegans Hypothetical
           protein C34B2.10 protein.
          Length = 105

 Score = 48.4 bits (110), Expect = 2e-06
 Identities = 19/58 (32%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
 Frame = +1

Query: 82  EKLYRAIITLFSIVGFVWGYIVQQFSQSVYXXXXXXXXXXXXTVPPWP-MYRRNPLNW 252
           E+ Y+ I+T+  I+GF+ G+  QQ S +++             +PPWP ++R+NP+ W
Sbjct: 28  ERTYQVILTIAGIIGFLVGFWTQQLSYAMFTVLGASAFTALIILPPWPFLFRKNPIVW 85


>U41270-5|AAA82442.2|  364|Caenorhabditis elegans Hypothetical
           protein AH9.4 protein.
          Length = 364

 Score = 27.5 bits (58), Expect = 3.7
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = -3

Query: 285 CWFVITVLRNLPVQRIASVHWPWRNSKNGSKQKSG 181
           CWF ++VLR + V         WR  +N  K  +G
Sbjct: 103 CWFFLSVLRYIAVFHPFKYRTIWRQPRNALKFLAG 137


>U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical protein
            C41A3.1 protein.
          Length = 7829

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +3

Query: 87   IIQGNNYIVQYSWFCMGLYSSAILAVSVYSWC 182
            ++  N+Y+  Y+ +C+ L      AVSVYS C
Sbjct: 5449 VMNMNSYLASYASYCLDLKGE---AVSVYSAC 5477


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,133,903
Number of Sequences: 27780
Number of extensions: 153917
Number of successful extensions: 431
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 425
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 431
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 609015246
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)