Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0039
         (395 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    23   1.3  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    23   1.7  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    22   2.9  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    20   9.0  
AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    20   9.0  

>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 23.0 bits (47), Expect = 1.3
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -3

Query: 141 ITPYKTNYTEQCN 103
           +TPY  NYT+ C+
Sbjct: 443 VTPYNKNYTKFCS 455


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 22.6 bits (46), Expect = 1.7
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +3

Query: 36  TSIPTHIDYVGQAKAGEIIQGNNYIV 113
           TS+PT+I Y+G+A     I G+   +
Sbjct: 652 TSMPTYICYLGKAYLMYAIAGSQCFI 677


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 21.8 bits (44), Expect = 2.9
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = +2

Query: 29  FLYIYTNPHRLRRTSKSRRNYTG 97
           FLYI  +   L R    R+NY G
Sbjct: 250 FLYISWHQKELVRRDSRRKNYGG 272


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 20.2 bits (40), Expect = 9.0
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = -1

Query: 311 GFHFFPFLAAGLSSPFL 261
           G+    FL AG+  PFL
Sbjct: 157 GYIIIGFLLAGIVQPFL 173


>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 20.2 bits (40), Expect = 9.0
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +2

Query: 275 TNQQPRKERSEIHYLKICLYNFYFSNICN 361
           +  +  +ERS+   +   L N Y SNI N
Sbjct: 305 SRDKTERERSKERKIISSLSNNYISNISN 333


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 102,905
Number of Sequences: 438
Number of extensions: 1973
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used:  9761793
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)