Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0038
(337 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC29B5.03c |rpl26||60S ribosomal protein L26|Schizosaccharomyc... 148 2e-37
SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr 2|||Ma... 29 0.19
SPAC22F8.06 |pam1||20S proteasome component beta 6|Schizosacchar... 26 1.8
SPBC354.02c |sec61||translocon alpha subunit Sec61|Schizosacchar... 24 5.4
SPAC2F3.12c |||conserved eukaryotic protein|Schizosaccharomyces ... 24 7.1
SPAC1002.07c |ats1||N-acetyltransferase Ats1 |Schizosaccharomyce... 24 7.1
SPAC13G6.09 |||zf-MYND type |Schizosaccharomyces pombe|chr 1|||M... 23 9.4
SPBC56F2.03 |||actin-like protein Arp10 |Schizosaccharomyces pom... 23 9.4
SPBC56F2.07c |||AAA family ATPase, unknown biological role|Schiz... 23 9.4
SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D |Schi... 23 9.4
SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces ... 23 9.4
>SPBC29B5.03c |rpl26||60S ribosomal protein L26|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 126
Score = 148 bits (359), Expect = 2e-37
Identities = 68/112 (60%), Positives = 92/112 (82%)
Frame = +2
Query: 2 MKFNKQVTSSRRKNRKRHFSAPSHIRRVLMSSPLSKELRQKFNVKSMPIRKDDEVQVVRG 181
MKF++ VTSSRRK RK HF APS +RRVLMS+PLSKELR+++ ++S+P+R+DD++ V+RG
Sbjct: 1 MKFSRDVTSSRRKQRKAHFGAPSSVRRVLMSAPLSKELREQYKIRSLPVRRDDQITVIRG 60
Query: 182 HYKGQQVGKVMQVYRKKFVVYIERIQREKANGATAYVGIHPSKCVIVKLKMN 337
KG++ GK+ VYRKKF++ IER+ REKANGA+A VGI SK VI KL ++
Sbjct: 61 SNKGRE-GKITSVYRKKFLLLIERVTREKANGASAPVGIDASKVVITKLHLD 111
>SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr
2|||Manual
Length = 918
Score = 29.1 bits (62), Expect = 0.19
Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
Frame = -1
Query: 289 ICCCTIGLFSLNPLNVYNKLFTIHLHHFA---NLLAFVVSTYNLNFIVFANRH 140
+ C +I LFS PL+ N+ F I+L F+ L ++ST + F F RH
Sbjct: 825 LTCISIPLFSFEPLSKKNR-FLINLFRFSFSFILYNLLISTSTVFFAGFFRRH 876
>SPAC22F8.06 |pam1||20S proteasome component beta
6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 225
Score = 25.8 bits (54), Expect = 1.8
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +3
Query: 171 LYVDTTKANRLAK*CRCIVKSLLYTLRGF 257
LY D + A+ C C+V++LLY R F
Sbjct: 78 LYHDNHERKMSAQSCACMVRTLLYGKRFF 106
>SPBC354.02c |sec61||translocon alpha subunit
Sec61|Schizosaccharomyces pombe|chr 2|||Manual
Length = 479
Score = 24.2 bits (50), Expect = 5.4
Identities = 13/43 (30%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Frame = -1
Query: 274 IGLF--SLNPLNVYNKLFTIHLHHFANLLAFVVSTYNLNFIVF 152
I LF ++N N++ K F+ +H AN + F + N +++F
Sbjct: 181 ISLFIATINCENIFWKAFSPTTYHIANGVQFEGAVINFVYVMF 223
>SPAC2F3.12c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 279
Score = 23.8 bits (49), Expect = 7.1
Identities = 9/26 (34%), Positives = 15/26 (57%)
Frame = +2
Query: 83 VLMSSPLSKELRQKFNVKSMPIRKDD 160
+ M SPL KE+ ++ + RK+D
Sbjct: 34 ISMKSPLEKEIANEYEALKVTERKED 59
>SPAC1002.07c |ats1||N-acetyltransferase Ats1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 168
Score = 23.8 bits (49), Expect = 7.1
Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = -1
Query: 184 VSTYNLNFIVFANRHGFYIEFLS*FLR-QGRGHQHSPYM 71
++ Y LNF + +R G Y+E L ++R Q RG + Y+
Sbjct: 69 MAIYFLNFSTWTSRVGIYLEDL--YVRPQFRGKGYGSYL 105
>SPAC13G6.09 |||zf-MYND type |Schizosaccharomyces pombe|chr
1|||Manual
Length = 274
Score = 23.4 bits (48), Expect = 9.4
Identities = 9/26 (34%), Positives = 12/26 (46%)
Frame = +1
Query: 244 H*EDSKRKGQWCNSICRHSPFKVCDC 321
H ++ G WCN+ C S C C
Sbjct: 181 HATSNEFPGLWCNNECIPSSIPNCAC 206
>SPBC56F2.03 |||actin-like protein Arp10 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 380
Score = 23.4 bits (48), Expect = 9.4
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = +2
Query: 65 PSHIRRVLMSSPLSKELRQKFNVKSMP 145
P H+R ++ SPL Q FN ++ P
Sbjct: 351 PKHLRHSIVESPLLYGQDQYFNGENAP 377
>SPBC56F2.07c |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 809
Score = 23.4 bits (48), Expect = 9.4
Identities = 8/22 (36%), Positives = 13/22 (59%)
Frame = -3
Query: 212 SLCQPVGLCSVHVQPELHRLCE 147
+LCQ GL ++H E +C+
Sbjct: 755 ALCQEAGLIAMHEDLEAKEICQ 776
>SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1107
Score = 23.4 bits (48), Expect = 9.4
Identities = 11/38 (28%), Positives = 23/38 (60%)
Frame = -3
Query: 176 VQPELHRLCE*AWILH*IFVLVP*TGERTSTLALYVKE 63
+ P+LH + A + + + ++P T E+T ++ +VKE
Sbjct: 737 IYPQLHSIDYQAPVANALQNIIPFTYEKTESIEEFVKE 774
>SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1213
Score = 23.4 bits (48), Expect = 9.4
Identities = 8/13 (61%), Positives = 13/13 (100%)
Frame = +3
Query: 156 TMKFRLYVDTTKA 194
T++FRLY+D++KA
Sbjct: 657 TVRFRLYLDSSKA 669
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,414,812
Number of Sequences: 5004
Number of extensions: 28483
Number of successful extensions: 86
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 95984434
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -