Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0038
(337 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0263 + 2136858-2137331 161 1e-40
12_01_0323 - 2459854-2460306 161 2e-40
11_01_0317 - 2365493-2365786,2365825-2365953 123 3e-29
06_03_1161 - 28089177-28089359,28089473-28089700,28089776-280898... 29 1.2
01_03_0263 + 14397549-14412911,14413023-14413787,14413950-14414132 28 2.2
03_05_0697 + 26888791-26888861,26890468-26890579,26891561-268917... 27 2.9
03_02_0446 - 8567436-8567567,8567649-8567768,8569837-8569914,857... 27 5.0
02_05_0082 + 25679089-25679253,25680998-25681030,25681758-25682579 26 6.6
11_06_0621 + 25587476-25587604,25588230-25588423,25588800-255888... 26 8.7
03_05_0092 - 20714102-20717902 26 8.7
02_05_0114 + 25958834-25961296 26 8.7
>01_01_0263 + 2136858-2137331
Length = 157
Score = 161 bits (391), Expect = 1e-40
Identities = 76/112 (67%), Positives = 96/112 (85%)
Frame = +2
Query: 2 MKFNKQVTSSRRKNRKRHFSAPSHIRRVLMSSPLSKELRQKFNVKSMPIRKDDEVQVVRG 181
MK N +VTSSRRK RK HF+APS +RRVLMS+ LS ELR K+NV+S+PIRKDDEVQVVRG
Sbjct: 1 MKRNPRVTSSRRKCRKAHFTAPSSVRRVLMSAALSSELRHKYNVRSIPIRKDDEVQVVRG 60
Query: 182 HYKGQQVGKVMQVYRKKFVVYIERIQREKANGATAYVGIHPSKCVIVKLKMN 337
YKG++ GKV+QVYR+++V+++ERI REK NG+T VGIHPSK V+ KLK++
Sbjct: 61 SYKGRE-GKVVQVYRRRWVIHVERITREKVNGSTVNVGIHPSKVVVTKLKLD 111
>12_01_0323 - 2459854-2460306
Length = 150
Score = 161 bits (390), Expect = 2e-40
Identities = 76/112 (67%), Positives = 96/112 (85%)
Frame = +2
Query: 2 MKFNKQVTSSRRKNRKRHFSAPSHIRRVLMSSPLSKELRQKFNVKSMPIRKDDEVQVVRG 181
MK N +VTSSRRK RK HF+APS +RRVLMS+ LS ELR K+NV+S+PIRKDDEVQVVRG
Sbjct: 1 MKRNPRVTSSRRKCRKAHFTAPSSVRRVLMSAALSTELRHKYNVRSIPIRKDDEVQVVRG 60
Query: 182 HYKGQQVGKVMQVYRKKFVVYIERIQREKANGATAYVGIHPSKCVIVKLKMN 337
YKG++ GKV+QVYR+++V+++ERI REK NG+T VGIHPSK V+ KLK++
Sbjct: 61 SYKGRE-GKVVQVYRRRWVIHVERITREKVNGSTVNVGIHPSKVVVTKLKLD 111
>11_01_0317 - 2365493-2365786,2365825-2365953
Length = 140
Score = 123 bits (297), Expect = 3e-29
Identities = 65/112 (58%), Positives = 83/112 (74%)
Frame = +2
Query: 2 MKFNKQVTSSRRKNRKRHFSAPSHIRRVLMSSPLSKELRQKFNVKSMPIRKDDEVQVVRG 181
MK N +VTSSRRK RK HF+APS +RRVLMS+ LS ELR K+NV VRG
Sbjct: 1 MKRNPRVTSSRRKCRKAHFTAPSSVRRVLMSAALSTELRHKYNV-------------VRG 47
Query: 182 HYKGQQVGKVMQVYRKKFVVYIERIQREKANGATAYVGIHPSKCVIVKLKMN 337
YKG++ GKV+QVYR+++V+++ERI REK NG+T VGIHPSK V+ KLK++
Sbjct: 48 SYKGRE-GKVVQVYRRRWVIHVERITREKVNGSTVNVGIHPSKVVVTKLKLD 98
>06_03_1161 -
28089177-28089359,28089473-28089700,28089776-28089814,
28090681-28090737,28090924-28091046
Length = 209
Score = 28.7 bits (61), Expect = 1.2
Identities = 21/88 (23%), Positives = 44/88 (50%), Gaps = 6/88 (6%)
Frame = +2
Query: 5 KFNKQVTSSRRKNRKRHFSAPSHIRRVLMSSPLSKELRQKFNVKSMPI------RKDDEV 166
+F + ++S++ ++F I+ + L + R+K S+P+ R D V
Sbjct: 42 EFRLRTSTSQQPTLCQNFVVKFMIKTCPIQMRLKRWERKKCKPNSLPVLHKMHVRIGDTV 101
Query: 167 QVVRGHYKGQQVGKVMQVYRKKFVVYIE 250
QV+ G KG +VG+V ++++ V ++
Sbjct: 102 QVIAGREKG-KVGEVTRLFKHNSTVIVK 128
>01_03_0263 + 14397549-14412911,14413023-14413787,14413950-14414132
Length = 5436
Score = 27.9 bits (59), Expect = 2.2
Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 3/78 (3%)
Frame = +2
Query: 101 LSKELRQKFNVKS-MPIRKDDEVQVVRGHYKGQQVGKVMQ--VYRKKFVVYIERIQREKA 271
L+ E+ ++ N KS +P K+D V GH + + V +VMQ + + IE +Q E++
Sbjct: 3846 LNDEVEEEKNDKSNIPKEKEDRFTV--GHTE-ESVHEVMQSVLVSDADLRSIETLQCEES 3902
Query: 272 NGATAYVGIHPSKCVIVK 325
NG + S C+IV+
Sbjct: 3903 NGVKSTGDYLESGCIIVE 3920
>03_05_0697 + 26888791-26888861,26890468-26890579,26891561-26891757,
26892215-26892266,26893530-26893795,26894007-26894229,
26895154-26895327,26895408-26895485,26895566-26895817,
26896138-26898204,26899477-26901322,26901474-26901574,
26902179-26902535,26902681-26902799,26903558-26903559,
26903630-26903662,26903709-26903841,26904285-26904537,
26905688-26905912,26906401-26906466,26907373-26907471,
26908528-26908545,26908546-26908893,26909878-26910354
Length = 2522
Score = 27.5 bits (58), Expect = 2.9
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = +2
Query: 110 ELRQKFNVKSMPIRKDDEVQVVRGHYKGQQVGKVMQVYRKKFVVYIERI 256
E KF + P K D +Q+V + + QQ + V K+F +YI +
Sbjct: 1278 ETTWKFLATTNPYEKVDRLQIVSEYMEIQQTDGHVDVSAKEFKMYISSL 1326
>03_02_0446 -
8567436-8567567,8567649-8567768,8569837-8569914,
8570018-8570122,8570214-8570306,8570464-8570619
Length = 227
Score = 26.6 bits (56), Expect = 5.0
Identities = 11/49 (22%), Positives = 26/49 (53%)
Frame = +2
Query: 107 KELRQKFNVKSMPIRKDDEVQVVRGHYKGQQVGKVMQVYRKKFVVYIER 253
+EL+Q+ + ++P DDE + + +++ R++FV++ R
Sbjct: 13 EELQQQHDEPAVPSADDDEAEAEENERRNRELKAGFHPLRRRFVLWYTR 61
>02_05_0082 + 25679089-25679253,25680998-25681030,25681758-25682579
Length = 339
Score = 26.2 bits (55), Expect = 6.6
Identities = 21/64 (32%), Positives = 33/64 (51%)
Frame = -1
Query: 337 IHLQLDNHTL*RVNADICCCTIGLFSLNPLNVYNKLFTIHLHHFANLLAFVVSTYNLNFI 158
+ LQL TL R + + T+ F + LN + LF + +H ++ LAF +YN
Sbjct: 71 VSLQLWTATLLRDASWVKILTVAYFFGSFLN--HNLF-LAIHELSHNLAFTTPSYNRWLG 127
Query: 157 VFAN 146
+FAN
Sbjct: 128 IFAN 131
>11_06_0621 +
25587476-25587604,25588230-25588423,25588800-25588874,
25589434-25591852
Length = 938
Score = 25.8 bits (54), Expect = 8.7
Identities = 16/54 (29%), Positives = 24/54 (44%)
Frame = -3
Query: 233 TFYDTPASLCQPVGLCSVHVQPELHRLCE*AWILH*IFVLVP*TGERTSTLALY 72
T YD A++C G+C + V P + W + + + TGE LA Y
Sbjct: 284 TCYDVQATICLFSGICRLGVVPSV-------WTWNLLLKFIAETGEYEMVLAAY 330
>03_05_0092 - 20714102-20717902
Length = 1266
Score = 25.8 bits (54), Expect = 8.7
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = -1
Query: 265 FSLNPLNVYNKLFTIHLHHFANLLAFVVSTYN 170
FS+ PL+ N LF + H N L +S +N
Sbjct: 1114 FSIEPLDWLNCLFNVCSLHLENTLLLKLSMFN 1145
>02_05_0114 + 25958834-25961296
Length = 820
Score = 25.8 bits (54), Expect = 8.7
Identities = 16/54 (29%), Positives = 24/54 (44%)
Frame = -3
Query: 233 TFYDTPASLCQPVGLCSVHVQPELHRLCE*AWILH*IFVLVP*TGERTSTLALY 72
T YD A++C G+C + V P + W + + + TGE LA Y
Sbjct: 166 TCYDVQATICLFSGICRLGVVPSV-------WTWNLLLKFIAETGEYEMVLAAY 212
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,941,816
Number of Sequences: 37544
Number of extensions: 178278
Number of successful extensions: 416
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 410
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 413
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 471517020
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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