Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0038
(337 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_31444| Best HMM Match : No HMM Matches (HMM E-Value=.) 180 2e-46
SB_56015| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.13
SB_27754| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.2
SB_21731| Best HMM Match : Ribosomal_L13e (HMM E-Value=7.2) 28 2.2
SB_50053| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 2.9
SB_49262| Best HMM Match : Virus_P-coat (HMM E-Value=1.8) 27 2.9
SB_30314| Best HMM Match : CBS (HMM E-Value=2.1) 27 3.8
SB_24368| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.0
SB_54603| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.0
SB_15946| Best HMM Match : Extensin_2 (HMM E-Value=1) 27 5.0
SB_28852| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 6.6
SB_9388| Best HMM Match : SRP54_N (HMM E-Value=4.8) 26 6.6
SB_19506| Best HMM Match : Viral_helicase1 (HMM E-Value=2.7) 26 6.6
SB_56914| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 8.7
SB_54947| Best HMM Match : rve (HMM E-Value=2.3e-31) 26 8.7
SB_31500| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 8.7
SB_1442| Best HMM Match : SRCR (HMM E-Value=0) 26 8.7
>SB_31444| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 144
Score = 180 bits (439), Expect = 2e-46
Identities = 84/112 (75%), Positives = 101/112 (90%)
Frame = +2
Query: 2 MKFNKQVTSSRRKNRKRHFSAPSHIRRVLMSSPLSKELRQKFNVKSMPIRKDDEVQVVRG 181
MK N +V+SSRRK+RK HFSAPS +RR LMS+PLSKELRQK+NV+S+P+RKDDEVQV RG
Sbjct: 1 MKRNSEVSSSRRKSRKAHFSAPSSVRRKLMSAPLSKELRQKYNVRSIPVRKDDEVQVTRG 60
Query: 182 HYKGQQVGKVMQVYRKKFVVYIERIQREKANGATAYVGIHPSKCVIVKLKMN 337
H+K QQVGKV+QVYRKK+V++I+RIQREKANGAT VGIHPSK IVKLK++
Sbjct: 61 HFKSQQVGKVIQVYRKKWVIHIDRIQREKANGATVSVGIHPSKVEIVKLKID 112
>SB_56015| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 136
Score = 31.9 bits (69), Expect = 0.13
Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Frame = +2
Query: 2 MKFNKQVTSSRRKNRKRHFSAPSHIRRVLMSSPLSKELRQKFNVKSMP--IRK 154
MK + Q+ RK+ K H P HIR+ S + K +R+ N + P IRK
Sbjct: 1 MKTHSQIQKHTRKS-KTHSQIPKHIRKSKTHSQIQKHIRKSKNTLANPKHIRK 52
>SB_27754| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 469
Score = 27.9 bits (59), Expect = 2.2
Identities = 13/41 (31%), Positives = 24/41 (58%)
Frame = -1
Query: 268 LFSLNPLNVYNKLFTIHLHHFANLLAFVVSTYNLNFIVFAN 146
L +++ ++YN+L +H+ H N L V T+ N +V A+
Sbjct: 338 LVAVHVTHLYNRLVAVHVTHLYNRLVAVHVTHLYNRLVAAH 378
Score = 26.6 bits (56), Expect = 5.0
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = -1
Query: 268 LFSLNPLNVYNKLFTIHLHHFANLLAFVVSTYNLNFIV 155
L +++ ++YN+L +H+ H N L V T+ N +V
Sbjct: 182 LVAVHVTHLYNRLVAVHVTHLYNRLVAVHVTHLYNRLV 219
Score = 26.6 bits (56), Expect = 5.0
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = -1
Query: 268 LFSLNPLNVYNKLFTIHLHHFANLLAFVVSTYNLNFIV 155
L +++ ++YN+L +H+ H N L V T+ N +V
Sbjct: 194 LVAVHVTHLYNRLVAVHVTHLYNRLVAVHVTHLYNRLV 231
Score = 26.6 bits (56), Expect = 5.0
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = -1
Query: 268 LFSLNPLNVYNKLFTIHLHHFANLLAFVVSTYNLNFIV 155
L +++ ++YN+L +H+ H N L V T+ N +V
Sbjct: 206 LVAVHVTHLYNRLVAVHVTHLYNRLVAVHVTHLYNRLV 243
Score = 26.2 bits (55), Expect = 6.6
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = -1
Query: 268 LFSLNPLNVYNKLFTIHLHHFANLLAFVVSTYNLNFIV 155
L ++ ++YN+L +H+ H N L V T+ N +V
Sbjct: 326 LVEVHVTHLYNRLVAVHVTHLYNRLVAVHVTHLYNRLV 363
Score = 25.8 bits (54), Expect = 8.7
Identities = 11/38 (28%), Positives = 22/38 (57%)
Frame = -1
Query: 268 LFSLNPLNVYNKLFTIHLHHFANLLAFVVSTYNLNFIV 155
L +++ ++YN+L +H+ H N + V T+ N +V
Sbjct: 278 LVAVHVTHLYNRLVAVHVSHLYNRMVAVHVTHLYNRMV 315
>SB_21731| Best HMM Match : Ribosomal_L13e (HMM E-Value=7.2)
Length = 606
Score = 27.9 bits (59), Expect = 2.2
Identities = 13/51 (25%), Positives = 26/51 (50%)
Frame = +2
Query: 8 FNKQVTSSRRKNRKRHFSAPSHIRRVLMSSPLSKELRQKFNVKSMPIRKDD 160
F+ S +K+ +R+F +HI + + +S SK+ ++ K + DD
Sbjct: 124 FSTSQASRPKKSNRRYFPTSNHIAKAISASRYSKDDQESLKRKVEEWQTDD 174
>SB_50053| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 959
Score = 27.5 bits (58), Expect = 2.9
Identities = 15/56 (26%), Positives = 33/56 (58%), Gaps = 2/56 (3%)
Frame = +2
Query: 68 SHIRRVLMSSPLSKELRQKFNVKSMPIRKDDEVQ--VVRGHYKGQQVGKVMQVYRK 229
+ ++++ + + K LR+ K+MP R+D+++Q V YK ++VG+ + R+
Sbjct: 139 NEVKQLGNGNNMEKILREFIKKKNMPKREDEKLQGNVSGRDYKNKKVGQKSEEQRE 194
>SB_49262| Best HMM Match : Virus_P-coat (HMM E-Value=1.8)
Length = 586
Score = 27.5 bits (58), Expect = 2.9
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = +1
Query: 61 CSFTYKASVDVLSPV*GTKTKIQCKIHAYSQR 156
CS K ++ L+ + GT KI+ K HA+S++
Sbjct: 72 CSCKTKTELNALNELLGTDEKIEKKSHAWSEK 103
>SB_30314| Best HMM Match : CBS (HMM E-Value=2.1)
Length = 869
Score = 27.1 bits (57), Expect = 3.8
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = -1
Query: 268 LFSLNPLNVYNKLFTIHLHHFANLLAFVVSTYNLNFIVFANR 143
L S+N L N+L TI+L NLL + ++N ++ NR
Sbjct: 503 LLSINRLLSINRLLTINLLLSINLLLSINRLLSINLLLSINR 544
>SB_24368| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1045
Score = 26.6 bits (56), Expect = 5.0
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = +3
Query: 228 KSLLYTLRGFKEKRPMVQQHMSAF 299
KSL+Y FK KRP V + SAF
Sbjct: 195 KSLIYEPSRFKPKRPSVSKLKSAF 218
>SB_54603| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 565
Score = 26.6 bits (56), Expect = 5.0
Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
Frame = -1
Query: 322 DNHTL*RVNADICCCTIGLFSLNPLNVYNKLFTIHLHHFANLLAFVVSTY-NLNFIVFAN 146
DNH R+N D CC GL + L + I H+ + VV Y +F+ + N
Sbjct: 242 DNHLNMRINTDPCCRRNGLEMAHHLATLLDKYDI---HYVLISGAVVGWYRERDFVPYDN 298
Query: 145 RHGFYIE 125
F I+
Sbjct: 299 DVDFIID 305
>SB_15946| Best HMM Match : Extensin_2 (HMM E-Value=1)
Length = 285
Score = 26.6 bits (56), Expect = 5.0
Identities = 12/19 (63%), Positives = 12/19 (63%)
Frame = +2
Query: 44 RKRHFSAPSHIRRVLMSSP 100
R H S PSH RRVL SP
Sbjct: 39 RVLHLSPPSHARRVLSLSP 57
>SB_28852| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3172
Score = 26.2 bits (55), Expect = 6.6
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = +3
Query: 216 RCIVKSLLYTLRGFKEKRPMVQQHMSAFTLQS 311
RC V ++ T+RGF + + +QH +A +Q+
Sbjct: 2147 RCAVIAIQATIRGFLTRSLLSRQHNAATAIQT 2178
>SB_9388| Best HMM Match : SRP54_N (HMM E-Value=4.8)
Length = 286
Score = 26.2 bits (55), Expect = 6.6
Identities = 18/48 (37%), Positives = 25/48 (52%)
Frame = +2
Query: 74 IRRVLMSSPLSKELRQKFNVKSMPIRKDDEVQVVRGHYKGQQVGKVMQ 217
I+R+L SS LSK LR+K S KD E + + H V ++ Q
Sbjct: 51 IQRILESSDLSKTLREKLTTLS---SKDAEKESEKRHIMFGLVKEIWQ 95
>SB_19506| Best HMM Match : Viral_helicase1 (HMM E-Value=2.7)
Length = 828
Score = 26.2 bits (55), Expect = 6.6
Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Frame = -3
Query: 329 ST*QSHTLKGE-CRHMLLHHWP--FLFESSQCIQQTFYD 222
ST + L+G+ CR M+L HWP F + + + +T D
Sbjct: 337 STYDTWPLQGDFCRTMMLLHWPNWFSLDELESVDETSKD 375
>SB_56914| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 406
Score = 25.8 bits (54), Expect = 8.7
Identities = 17/75 (22%), Positives = 37/75 (49%)
Frame = +2
Query: 14 KQVTSSRRKNRKRHFSAPSHIRRVLMSSPLSKELRQKFNVKSMPIRKDDEVQVVRGHYKG 193
K+ S ++ + K+H S+ HI+ + + K + N+K++ + + G KG
Sbjct: 93 KETLSKKKSSIKKHVSSAKHIKSI---ENIKKSKTKDQNIKNILTKSN-------GAAKG 142
Query: 194 QQVGKVMQVYRKKFV 238
+ + M++YR + V
Sbjct: 143 ATLPEDMRIYRYELV 157
>SB_54947| Best HMM Match : rve (HMM E-Value=2.3e-31)
Length = 1283
Score = 25.8 bits (54), Expect = 8.7
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = -2
Query: 255 ILSMYTTNFLRYTCITL 205
ILS+ T F++YTCI L
Sbjct: 244 ILSLQLTQFIQYTCIML 260
>SB_31500| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1446
Score = 25.8 bits (54), Expect = 8.7
Identities = 9/25 (36%), Positives = 18/25 (72%)
Frame = +2
Query: 158 DEVQVVRGHYKGQQVGKVMQVYRKK 232
DE+Q ++ + Q+VGK++ V ++K
Sbjct: 39 DELQTIQNEPQSQKVGKLLDVVQRK 63
>SB_1442| Best HMM Match : SRCR (HMM E-Value=0)
Length = 2103
Score = 25.8 bits (54), Expect = 8.7
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = +1
Query: 289 CRHSPFKVCDCQVEDE 336
CRH+PF V DC+ E +
Sbjct: 870 CRHNPFGVHDCKHEHD 885
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,717,539
Number of Sequences: 59808
Number of extensions: 215542
Number of successful extensions: 628
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 560
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 628
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 473307974
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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