Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0038
         (337 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    24   0.43 
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    22   1.7  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   1.7  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    22   1.7  
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    22   2.3  
DQ435333-1|ABD92648.1|  135|Apis mellifera OBP16 protein.              21   3.0  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    20   7.0  
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    20   9.2  
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    20   9.2  

>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 24.2 bits (50), Expect = 0.43
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -3

Query: 314 HTLKGECRHMLLHHWPFLFESS 249
           HT + +C H LL H P L + S
Sbjct: 330 HTPEPDCIHELLGHMPLLADPS 351


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 22.2 bits (45), Expect = 1.7
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = -1

Query: 262 SLNPLNVYNKLF 227
           S+NP+NVY K +
Sbjct: 35  SINPINVYTKAY 46


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 22.2 bits (45), Expect = 1.7
 Identities = 6/17 (35%), Positives = 10/17 (58%)
 Frame = +1

Query: 277 CNSICRHSPFKVCDCQV 327
           C ++C    F  CDC++
Sbjct: 743 CFALCHCCDFDACDCEM 759


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 22.2 bits (45), Expect = 1.7
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = -1

Query: 175 YNLNFIVFANRHGFYI 128
           YN +FI++++   FYI
Sbjct: 339 YNTDFIIYSSLSSFYI 354


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 21.8 bits (44), Expect = 2.3
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = -3

Query: 275 HWPFLFESSQCIQQTF 228
           H+P++F  + CI Q+F
Sbjct: 117 HFPYVFGEAFCIIQSF 132


>DQ435333-1|ABD92648.1|  135|Apis mellifera OBP16 protein.
          Length = 135

 Score = 21.4 bits (43), Expect = 3.0
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = +1

Query: 40  KQEEAFQCSFTYKASVDVLS 99
           K  + FQC   YK   D+L+
Sbjct: 115 KISKIFQCFMKYKTITDILN 134


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 20.2 bits (40), Expect = 7.0
 Identities = 7/34 (20%), Positives = 21/34 (61%)
 Frame = +2

Query: 146 IRKDDEVQVVRGHYKGQQVGKVMQVYRKKFVVYI 247
           +++DD+V++V  ++  Q +  ++ +     ++YI
Sbjct: 384 VQEDDDVKLVLLNFGWQMICLIVVIALVSIIMYI 417


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 19.8 bits (39), Expect = 9.2
 Identities = 6/18 (33%), Positives = 13/18 (72%)
 Frame = +3

Query: 237 LYTLRGFKEKRPMVQQHM 290
           L ++ G+K   P++Q+H+
Sbjct: 306 LLSVLGYKYITPLIQKHL 323


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 19.8 bits (39), Expect = 9.2
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = -1

Query: 214 HHFANLLAFVVSTYNLNFI 158
           H   NL    +S++NLN++
Sbjct: 257 HKTQNLYYSAMSSHNLNYV 275


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 91,651
Number of Sequences: 438
Number of extensions: 1601
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7591023
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)