Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0038
         (337 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g49910.1 68416.m05456 60S ribosomal protein L26 (RPL26A) 60S ...   163   2e-41
At5g67510.1 68418.m08513 60S ribosomal protein L26 (RPL26B)           163   3e-41
At1g28070.1 68414.m03436 expressed protein ; expression supporte...    28   1.3  
At4g35380.1 68417.m05026 guanine nucleotide exchange family prot...    27   2.4  
At1g50500.1 68414.m05664 membrane trafficking VPS53 family prote...    27   2.4  
At4g02110.1 68417.m00282 BRCT domain-containing protein contains...    27   4.1  
At3g57660.1 68416.m06424 DNA-directed RNA polymerase family prot...    26   7.2  
At3g17360.1 68416.m02218 kinesin motor protein-related similar t...    26   7.2  
At1g55325.1 68414.m06320 expressed protein                             26   7.2  
At5g58120.1 68418.m07272 disease resistance protein (TIR-NBS-LRR...    25   9.5  

>At3g49910.1 68416.m05456 60S ribosomal protein L26 (RPL26A) 60S
           RIBOSOMAL PROTEIN L26, Brassica rapa, EMBL:BRD495
          Length = 146

 Score =  163 bits (397), Expect = 2e-41
 Identities = 78/112 (69%), Positives = 96/112 (85%)
 Frame = +2

Query: 2   MKFNKQVTSSRRKNRKRHFSAPSHIRRVLMSSPLSKELRQKFNVKSMPIRKDDEVQVVRG 181
           MK+N +VTSSRRKNRK HF+A S  RRV+MSSPLS +LRQK+NV+SMPIRKDDEVQ+VRG
Sbjct: 1   MKYNPRVTSSRRKNRKAHFTASSSERRVIMSSPLSTDLRQKYNVRSMPIRKDDEVQIVRG 60

Query: 182 HYKGQQVGKVMQVYRKKFVVYIERIQREKANGATAYVGIHPSKCVIVKLKMN 337
            YKG++ GKV+QVYR+K+V++IERI REK NG T  VGI PSK VI KL+++
Sbjct: 61  TYKGRE-GKVVQVYRRKWVIHIERITREKVNGTTVNVGIQPSKVVITKLRLD 111


>At5g67510.1 68418.m08513 60S ribosomal protein L26 (RPL26B)
          Length = 146

 Score =  163 bits (395), Expect = 3e-41
 Identities = 77/112 (68%), Positives = 97/112 (86%)
 Frame = +2

Query: 2   MKFNKQVTSSRRKNRKRHFSAPSHIRRVLMSSPLSKELRQKFNVKSMPIRKDDEVQVVRG 181
           MKFN +V+SSRRKNRK HF+APS +RRVLMSSPLSK+LR K NV+SMPIRKDDEVQVVRG
Sbjct: 1   MKFNPRVSSSRRKNRKAHFTAPSSVRRVLMSSPLSKDLRNKHNVRSMPIRKDDEVQVVRG 60

Query: 182 HYKGQQVGKVMQVYRKKFVVYIERIQREKANGATAYVGIHPSKCVIVKLKMN 337
            +KG++ GKVMQVYR+K+V++IERI REK NG+T  VG++ S  +I KL+++
Sbjct: 61  TFKGRE-GKVMQVYRRKWVIHIERITREKVNGSTVNVGVNASNVMITKLRLD 111


>At1g28070.1 68414.m03436 expressed protein ; expression supported
           by MPSS
          Length = 176

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 17/61 (27%), Positives = 28/61 (45%)
 Frame = +2

Query: 26  SSRRKNRKRHFSAPSHIRRVLMSSPLSKELRQKFNVKSMPIRKDDEVQVVRGHYKGQQVG 205
           S R      HFS PSH+ + L     + E+  +     M +++D    + RG+Y  Q  G
Sbjct: 38  SDRFLELSSHFSVPSHLEQCL--DLKTGEIYYRSWNSGMRVKEDPRKSMSRGNYADQSSG 95

Query: 206 K 208
           +
Sbjct: 96  E 96


>At4g35380.1 68417.m05026 guanine nucleotide exchange family protein
            similar to guanine nucleotide exchange factor [Homo
            sapiens] GI:5456754; contains Pfam profile PF01369: Sec7
            domain
          Length = 1706

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 11/16 (68%), Positives = 13/16 (81%)
 Frame = +3

Query: 27   PQEGKTGRGISVLLHI 74
            P +G TG GISVLLH+
Sbjct: 1408 PFQGSTGSGISVLLHL 1423


>At1g50500.1 68414.m05664 membrane trafficking VPS53 family protein
           contains Pfam domain PF04100: Vps53-like, N-terminal
          Length = 798

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
 Frame = +2

Query: 107 KELRQKFNVKSMPIR--KDDEVQVVRGHYKGQQVGKVMQVYRKKFVVYIERIQREK 268
           KEL +KF    +P +  +DD  ++       Q + K+ + Y KKF    E  + EK
Sbjct: 315 KELEKKFG-GGVPTKDIEDDIEEIGTWEDNSQNISKIRKKYEKKFAASQETEENEK 369


>At4g02110.1 68417.m00282 BRCT domain-containing protein contains
           Pfam domain, PF00533: BRCA1 C Terminus (BRCT) domain
          Length = 1293

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 13/53 (24%), Positives = 29/53 (54%)
 Frame = +2

Query: 5   KFNKQVTSSRRKNRKRHFSAPSHIRRVLMSSPLSKELRQKFNVKSMPIRKDDE 163
           K     ++S  ++ +RH S  ++ R+ L  SP +  L ++ + ++  +R DD+
Sbjct: 269 KMETDGSTSINRSIRRHSSLATYSRKTLQRSPETDTLGKESSGQNRSLRMDDK 321


>At3g57660.1 68416.m06424 DNA-directed RNA polymerase family protein
           similar to SP|O35134 DNA-directed RNA polymerase I
           largest subunit (EC 2.7.7.6) (RNA polymerase I 194 kDa
           subunit) (RPA194) {Mus musculus}; contains InterPro
           accession IPR000722: RNA polymerase, alpha subunit
          Length = 1670

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = -1

Query: 241 YNKLFTIHLHHFANLLAFVVSTYNLNFIVFANRHGF 134
           Y  + T+H  + +N    ++S ++  F VF   HGF
Sbjct: 801 YGLVHTVHELYGSNAAGNLLSVFSRLFTVFLQTHGF 836


>At3g17360.1 68416.m02218 kinesin motor protein-related similar to
           KLP2 protein GB:CAA63826 from [Xenopus laevis]
          Length = 2008

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = +2

Query: 68  SHIRRVLMSSPLSKELRQKFNVKSMPIRKDDEVQVVRGHY 187
           S  + V+  + + KE     N+ S  IR+ DE+Q   G Y
Sbjct: 717 SFSKHVMKENEMEKEFEDCRNMNSSLIRELDEIQAGLGRY 756


>At1g55325.1 68414.m06320 expressed protein
          Length = 1921

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 12/42 (28%), Positives = 21/42 (50%)
 Frame = -2

Query: 321  TITHFEG*MPTYAVAPLAFSL*ILSMYTTNFLRYTCITLPTC 196
            ++ + EG  P  ++   AFS  ++      FL  + + LPTC
Sbjct: 1731 SVNYIEGFTPVKSLGSTAFSYMMIPSPNMRFLHPSPLQLPTC 1772


>At5g58120.1 68418.m07272 disease resistance protein (TIR-NBS-LRR
            class), putative domain signature TIR-NBS-LRR exists,
            suggestive of a disease resistance protein.
          Length = 1046

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = +2

Query: 146  IRKDDEVQVVRGHYKGQQV 202
            I+ DD    VRGHYK   V
Sbjct: 1004 IKHDDHTNRVRGHYKASNV 1022


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,339,180
Number of Sequences: 28952
Number of extensions: 147324
Number of successful extensions: 412
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 407
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 410
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 389454624
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)