Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0035
(652 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0) 338 2e-93
SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43) 48 5e-06
SB_31292| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0.0015) 39 0.003
SB_58392| Best HMM Match : Peptidase_M16_C (HMM E-Value=1.2e-24) 32 0.47
SB_25386| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.81
SB_42068| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.81
SB_22029| Best HMM Match : Copine (HMM E-Value=3.6e-24) 31 1.1
SB_19307| Best HMM Match : GTP_EFTU_D2 (HMM E-Value=0.068) 30 1.4
SB_39367| Best HMM Match : RVT_1 (HMM E-Value=2.3e-26) 29 2.5
SB_43115| Best HMM Match : SapB_1 (HMM E-Value=3.9) 29 3.3
SB_34586| Best HMM Match : Drf_FH1 (HMM E-Value=0.088) 29 3.3
SB_6832| Best HMM Match : HLH (HMM E-Value=2.4e-14) 29 3.3
SB_20812| Best HMM Match : rve (HMM E-Value=1.2e-25) 28 5.7
SB_25301| Best HMM Match : GTP_EFTU_D2 (HMM E-Value=0.066) 28 5.7
SB_50612| Best HMM Match : RVT_1 (HMM E-Value=2.3e-26) 28 7.6
SB_48736| Best HMM Match : RVT_1 (HMM E-Value=1.4e-11) 28 7.6
SB_45778| Best HMM Match : Exo_endo_phos (HMM E-Value=1e-10) 28 7.6
SB_34860| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.6
SB_29742| Best HMM Match : zf-CCHC (HMM E-Value=3.4e-05) 28 7.6
SB_21418| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.6
SB_11954| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.6
SB_10446| Best HMM Match : Exo_endo_phos (HMM E-Value=6.6e-20) 28 7.6
SB_8311| Best HMM Match : RVT_1 (HMM E-Value=3.9e-29) 28 7.6
SB_59169| Best HMM Match : Sre (HMM E-Value=3.3) 28 7.6
SB_55599| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.6
SB_50149| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.6
SB_45671| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.6
SB_36722| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.6
SB_26322| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.6
>SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)
Length = 322
Score = 338 bits (831), Expect = 2e-93
Identities = 153/195 (78%), Positives = 177/195 (90%)
Frame = +1
Query: 4 LPLQDVYKIGGIGTVPVGRVETGVLKPGTIVVFAPANITTEVKSVEMHHEALQEAVPGDN 183
LPLQDVYKIGGIGTVPVGRVETGVLKPGT+V F+P+NITTEVKSVEMHHE+L EA+PGDN
Sbjct: 107 LPLQDVYKIGGIGTVPVGRVETGVLKPGTVVTFSPSNITTEVKSVEMHHESLAEALPGDN 166
Query: 184 VGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAH 363
VGFNVKNVSVK+++RG VAGD KNNPPK FTAQVIV+NHPG+I GY+PVLDCHTAH
Sbjct: 167 VGFNVKNVSVKDIKRGNVAGDFKNNPPKPCKSFTAQVIVMNHPGEIHAGYSPVLDCHTAH 226
Query: 364 IACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVR 543
IACKF ++ EK+DRR+GK E NPK IK+GDAA+V ++PSKP+CVE+F EFPPLGRFAVR
Sbjct: 227 IACKFDKLLEKIDRRSGKKLEDNPKMIKTGDAAMVEMIPSKPMCVETFTEFPPLGRFAVR 286
Query: 544 DMRQTVAVGVIKAVN 588
DM+QTVAVGVIK+V+
Sbjct: 287 DMKQTVAVGVIKSVD 301
>SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)
Length = 547
Score = 48.4 bits (110), Expect = 5e-06
Identities = 19/50 (38%), Positives = 29/50 (58%)
Frame = +1
Query: 397 VDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRD 546
+D++TGK + P+ IK AI L +C+E F +F +GRF +RD
Sbjct: 496 IDKKTGKKGQTRPRFIKQDQIAIARLETQGVICIEKFSDFQQMGRFTLRD 545
>SB_31292| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0.0015)
Length = 80
Score = 39.1 bits (87), Expect = 0.003
Identities = 18/39 (46%), Positives = 26/39 (66%)
Frame = +1
Query: 460 AIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVI 576
A V L S+P+CVE ++++ LGRF +R T+A GVI
Sbjct: 40 AEVELQTSRPVCVELYKDYKDLGRFMLRYGGNTIAAGVI 78
>SB_58392| Best HMM Match : Peptidase_M16_C (HMM E-Value=1.2e-24)
Length = 1064
Score = 31.9 bits (69), Expect = 0.47
Identities = 21/77 (27%), Positives = 32/77 (41%)
Frame = -2
Query: 249 GVTSNITTTQFLDGHVLYVETYIVSRYSFLESFVVHLHRLDFSSDVGGGKDNNGTWFQHT 70
G T TTT V T ++SRYS++E + H + S + TW Q
Sbjct: 86 GQTDRRTTTHTATSVVENPYTSLISRYSYIEKLMTHHYTYRHISGGDPLHIPDLTWEQLK 145
Query: 69 SFNSADGHGTNTTDFVY 19
F++ H +N + Y
Sbjct: 146 KFHATHYHPSNARFYTY 162
>SB_25386| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 695
Score = 31.1 bits (67), Expect = 0.81
Identities = 16/43 (37%), Positives = 28/43 (65%)
Frame = +1
Query: 361 HIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKP 489
HIA K E+K D ++ K+ ++ PK++ SGD ++VP++P
Sbjct: 74 HIAKKL-EVK---DSQSSKNNDLYPKTVPSGDIGTDSVVPNQP 112
>SB_42068| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3367
Score = 31.1 bits (67), Expect = 0.81
Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 3/39 (7%)
Frame = -3
Query: 449 DLMDF--GLTSVDLPVRRSTFSL-ISANLQAMWAVWQSK 342
DL +F G+T++ LP ST + NLQ W +WQSK
Sbjct: 2456 DLGNFIKGITTIPLPSSSSTPIIDFEVNLQGEWILWQSK 2494
>SB_22029| Best HMM Match : Copine (HMM E-Value=3.6e-24)
Length = 726
Score = 30.7 bits (66), Expect = 1.1
Identities = 15/47 (31%), Positives = 25/47 (53%)
Frame = +1
Query: 382 EIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPP 522
EI R TG++TE+N ++ SG+ I +V + C+ Q + P
Sbjct: 257 EINASHSRETGQTTEIN--ALHSGEPGIPGVVAAYQACIRQVQLYGP 301
>SB_19307| Best HMM Match : GTP_EFTU_D2 (HMM E-Value=0.068)
Length = 173
Score = 30.3 bits (65), Expect = 1.4
Identities = 15/53 (28%), Positives = 27/53 (50%)
Frame = +1
Query: 22 YKIGGIGTVPVGRVETGVLKPGTIVVFAPANITTEVKSVEMHHEALQEAVPGD 180
+ I G GT+ G + +G + V +T +VKS++M + + +A GD
Sbjct: 120 FSIRGQGTIMTGTILSGSVCVNDTVEIPSLKVTKKVKSMQMFKKPVDKASQGD 172
>SB_39367| Best HMM Match : RVT_1 (HMM E-Value=2.3e-26)
Length = 903
Score = 29.5 bits (63), Expect = 2.5
Identities = 12/30 (40%), Positives = 20/30 (66%)
Frame = +1
Query: 466 VNLVPSKPLCVESFQEFPPLGRFAVRDMRQ 555
+++VP++P CV SF EF + +RD+ Q
Sbjct: 380 MSVVPAQPQCVASFPEFCAVSVSYIRDLSQ 409
>SB_43115| Best HMM Match : SapB_1 (HMM E-Value=3.9)
Length = 495
Score = 29.1 bits (62), Expect = 3.3
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = -3
Query: 587 LTALMTPTATVCLMSRTAKRPRGGNSWKDSTHR 489
LT+L PT L RT +PR G W+ + H+
Sbjct: 409 LTSLNEPTGEDLLFGRTLWKPRFGYLWQSAIHQ 441
>SB_34586| Best HMM Match : Drf_FH1 (HMM E-Value=0.088)
Length = 665
Score = 29.1 bits (62), Expect = 3.3
Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
Frame = -3
Query: 230 PRRNSLTDTFFTLKPTLSPGTASWRASWCISTDLTSVVMLAGAKTTMVPGFNT-PVSTLP 54
P +T + TLSPGT + + S +A +TT+ P T PV+TLP
Sbjct: 17 PETTVSPETTAVPETTLSPGTTAAPETTVAPETTVSPETIAEPETTVAPETTTAPVTTLP 76
Query: 53 TGTVPIP 33
+ P
Sbjct: 77 PDSTMAP 83
>SB_6832| Best HMM Match : HLH (HMM E-Value=2.4e-14)
Length = 189
Score = 29.1 bits (62), Expect = 3.3
Identities = 17/63 (26%), Positives = 29/63 (46%)
Frame = +1
Query: 355 TAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRF 534
T H+A + E ++ + T K V+ S + + +L S +EFP LG+
Sbjct: 103 TVHLAALYIEHMTEIIQNTEKPPSVSDASSPGTTSDLDDLETDFTFSDFSLEEFPELGKL 162
Query: 535 AVR 543
A+R
Sbjct: 163 ALR 165
>SB_20812| Best HMM Match : rve (HMM E-Value=1.2e-25)
Length = 1097
Score = 28.3 bits (60), Expect = 5.7
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = -3
Query: 572 TPTATVCLMSRTAKRPRGGNSWKDSTHRGLEG 477
TP+ VCL+SR + PR W R + G
Sbjct: 282 TPSLYVCLLSRAHRDPRLSTGWSPYEKREVRG 313
>SB_25301| Best HMM Match : GTP_EFTU_D2 (HMM E-Value=0.066)
Length = 177
Score = 28.3 bits (60), Expect = 5.7
Identities = 14/68 (20%), Positives = 30/68 (44%), Gaps = 4/68 (5%)
Frame = +1
Query: 10 LQDVYKIGGIGTVPVGRVETGVLKPGTIVVFAPANI----TTEVKSVEMHHEALQEAVPG 177
+ D Y + G+GTV G G+++ ++ P + ++S+ ++E G
Sbjct: 109 IDDTYSVPGVGTVISGTCMKGIIRLNDTLLLGPDPLGQFQPVAIRSIHRKRMPVKEVRGG 168
Query: 178 DNVGFNVK 201
F++K
Sbjct: 169 QTASFSLK 176
>SB_50612| Best HMM Match : RVT_1 (HMM E-Value=2.3e-26)
Length = 904
Score = 27.9 bits (59), Expect = 7.6
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = +1
Query: 466 VNLVPSKPLCVESFQEFPPLGRFAVRDMRQ 555
++++P++P CV SF EF + +RD+ Q
Sbjct: 381 MSVMPAQPQCVASFPEFCAVSVSYIRDLLQ 410
>SB_48736| Best HMM Match : RVT_1 (HMM E-Value=1.4e-11)
Length = 1175
Score = 27.9 bits (59), Expect = 7.6
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +1
Query: 466 VNLVPSKPLCVESFQEFPPLGRFAVRDMRQ 555
+++ P++P CV SF EF + +RD+ Q
Sbjct: 385 MSVTPAQPQCVASFPEFSAVSVSYIRDILQ 414
>SB_45778| Best HMM Match : Exo_endo_phos (HMM E-Value=1e-10)
Length = 549
Score = 27.9 bits (59), Expect = 7.6
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +1
Query: 466 VNLVPSKPLCVESFQEFPPLGRFAVRDMRQ 555
+++ P++P CV SF EF + +RD+ Q
Sbjct: 389 MSVTPAQPQCVASFPEFSAVSVSYIRDILQ 418
>SB_34860| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 114
Score = 27.9 bits (59), Expect = 7.6
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Frame = +1
Query: 109 ANITTEVKSVEMHHEALQ-EAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPP 264
A+ TT A+Q E PG ++G + + VKEL++ AG + PP
Sbjct: 49 ASATTSTTGSHQAMSAMQSEEEPGASMGHRTERLKVKELKQMKRAGLTPLRPP 101
>SB_29742| Best HMM Match : zf-CCHC (HMM E-Value=3.4e-05)
Length = 1131
Score = 27.9 bits (59), Expect = 7.6
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +1
Query: 466 VNLVPSKPLCVESFQEFPPLGRFAVRDMRQ 555
+++ P++P CV SF EF + +RD+ Q
Sbjct: 1044 MSVTPAQPQCVASFPEFSAVSVSYIRDILQ 1073
>SB_21418| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 887
Score = 27.9 bits (59), Expect = 7.6
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +1
Query: 466 VNLVPSKPLCVESFQEFPPLGRFAVRDMRQ 555
+++ P++P CV SF EF + +RD+ Q
Sbjct: 532 MSVTPAQPQCVASFPEFSAVSVSYIRDILQ 561
>SB_11954| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 145
Score = 27.9 bits (59), Expect = 7.6
Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Frame = +1
Query: 94 VVFAPANITTEVKSVEMHHE-ALQEAVPGDNVGFNVKNVSVKELRRGYV 237
VVF P NI+ + ++ A ++ +P + +KN + R GYV
Sbjct: 14 VVFDPENISVDEGMIKFKGRLAFRQYMPAKPTKYGIKNWMAADARNGYV 62
>SB_10446| Best HMM Match : Exo_endo_phos (HMM E-Value=6.6e-20)
Length = 1285
Score = 27.9 bits (59), Expect = 7.6
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +1
Query: 466 VNLVPSKPLCVESFQEFPPLGRFAVRDMRQ 555
+++ P++P CV SF EF + +RD+ Q
Sbjct: 1111 MSVTPAQPQCVASFPEFSAVSVSYIRDILQ 1140
>SB_8311| Best HMM Match : RVT_1 (HMM E-Value=3.9e-29)
Length = 605
Score = 27.9 bits (59), Expect = 7.6
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +1
Query: 466 VNLVPSKPLCVESFQEFPPLGRFAVRDMRQ 555
+++ P++P CV SF EF + +RD+ Q
Sbjct: 184 MSVTPAQPQCVASFPEFSAVSVSYIRDILQ 213
>SB_59169| Best HMM Match : Sre (HMM E-Value=3.3)
Length = 447
Score = 27.9 bits (59), Expect = 7.6
Identities = 12/42 (28%), Positives = 22/42 (52%)
Frame = -3
Query: 140 STDLTSVVMLAGAKTTMVPGFNTPVSTLPTGTVPIPPILYTS 15
+TD+TS+ M+ TT + ++T T + I I+ T+
Sbjct: 234 TTDITSITMIITTSTTDITSITMIITTTTTDDISITMIIITT 275
>SB_55599| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 988
Score = 27.9 bits (59), Expect = 7.6
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +1
Query: 466 VNLVPSKPLCVESFQEFPPLGRFAVRDMRQ 555
+++ P++P CV SF EF + +RD+ Q
Sbjct: 3 MSVTPAQPQCVASFPEFSAVSVSYIRDILQ 32
>SB_50149| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 656
Score = 27.9 bits (59), Expect = 7.6
Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Frame = +1
Query: 322 SNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLV-PSKP 489
+N P+L+ T +A K D T + +VN KS G +I+ P+ P
Sbjct: 586 ANALNPLLEHRTEKVALSKPMSNGKEDLNTETTADVNKKSCADGSDSIIGTTDPNSP 642
>SB_45671| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 270
Score = 27.9 bits (59), Expect = 7.6
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +1
Query: 466 VNLVPSKPLCVESFQEFPPLGRFAVRDMRQ 555
+++ P++P CV SF EF + +RD+ Q
Sbjct: 87 MSVTPAQPQCVASFPEFSAVSVSYIRDILQ 116
>SB_36722| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 148
Score = 27.9 bits (59), Expect = 7.6
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +1
Query: 466 VNLVPSKPLCVESFQEFPPLGRFAVRDMRQ 555
+++ P++P CV SF EF + +RD+ Q
Sbjct: 3 MSVTPAQPQCVASFPEFSAVSVSYIRDILQ 32
>SB_26322| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 229
Score = 27.9 bits (59), Expect = 7.6
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +1
Query: 466 VNLVPSKPLCVESFQEFPPLGRFAVRDMRQ 555
+++ P++P CV SF EF + +RD+ Q
Sbjct: 3 MSVTPAQPQCVASFPEFSAVSVSYIRDILQ 32
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.317 0.135 0.394
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,199,392
Number of Sequences: 59808
Number of extensions: 502563
Number of successful extensions: 1688
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 1481
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1684
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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