Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0035
(652 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF015267-1|AAC38959.1| 461|Apis mellifera elongation factor-1al... 385 e-109
X52884-1|CAA37066.1| 461|Apis mellifera elongation factor 1 alp... 376 e-106
EF013227-1|ABK54581.1| 119|Apis mellifera elongation factor 1-a... 233 1e-63
AY208278-1|AAO48970.1| 274|Apis mellifera elongation factor 1-a... 168 4e-44
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr... 23 2.6
L01588-1|AAA27735.1| 74|Apis mellifera zinc finger protein pro... 22 5.9
AY268031-1|AAP23056.1| 810|Apis mellifera dorsal protein splice... 22 5.9
AY268030-1|AAP23055.1| 602|Apis mellifera dorsal protein protein. 22 5.9
>AF015267-1|AAC38959.1| 461|Apis mellifera elongation factor-1alpha
F2 protein.
Length = 461
Score = 385 bits (947), Expect = e-109
Identities = 181/196 (92%), Positives = 187/196 (95%)
Frame = +1
Query: 4 LPLQDVYKIGGIGTVPVGRVETGVLKPGTIVVFAPANITTEVKSVEMHHEALQEAVPGDN 183
LPLQDVYKIGGIGTVPVGRVETGVLKPG +V FAPA +TTEVKSVEMHHEALQEAVPGDN
Sbjct: 248 LPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFAPAGLTTEVKSVEMHHEALQEAVPGDN 307
Query: 184 VGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAH 363
VGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAH
Sbjct: 308 VGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAH 367
Query: 364 IACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVR 543
IACKFA+IKEK DRR GK+TE NPKSIKSGDAAIV LVPSKP+C E+FQEFPPLGRFAVR
Sbjct: 368 IACKFADIKEKCDRRNGKTTEENPKSIKSGDAAIVMLVPSKPMCAEAFQEFPPLGRFAVR 427
Query: 544 DMRQTVAVGVIKAVNF 591
DMRQTVAVGVIKAV F
Sbjct: 428 DMRQTVAVGVIKAVTF 443
>X52884-1|CAA37066.1| 461|Apis mellifera elongation factor 1 alpha
protein.
Length = 461
Score = 376 bits (924), Expect = e-106
Identities = 175/196 (89%), Positives = 186/196 (94%)
Frame = +1
Query: 4 LPLQDVYKIGGIGTVPVGRVETGVLKPGTIVVFAPANITTEVKSVEMHHEALQEAVPGDN 183
LPLQDVYKIGGIGTVPVGRVETG+LKPG +V FAPA +TTEVKSVEMHHEAL EA+PGDN
Sbjct: 248 LPLQDVYKIGGIGTVPVGRVETGILKPGMLVTFAPAALTTEVKSVEMHHEALTEALPGDN 307
Query: 184 VGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAH 363
VGFNVKN+SVKELRRGYVAGDSKN PP+GAADFTAQVIVLNHPGQISNGYTPVLDCHTAH
Sbjct: 308 VGFNVKNISVKELRRGYVAGDSKNQPPRGAADFTAQVIVLNHPGQISNGYTPVLDCHTAH 367
Query: 364 IACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVR 543
IACKFAEIKEK DRRTGK+TE NPKSIKSGDAAIV L P+KP+CVE+FQEFPPLGRFAVR
Sbjct: 368 IACKFAEIKEKCDRRTGKTTEENPKSIKSGDAAIVMLQPTKPMCVEAFQEFPPLGRFAVR 427
Query: 544 DMRQTVAVGVIKAVNF 591
DMRQTVAVGVIK+V F
Sbjct: 428 DMRQTVAVGVIKSVTF 443
Score = 21.8 bits (44), Expect = 5.9
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = -3
Query: 182 LSPGTASWRASWCISTDLTSVVMLAGAKTTMVPGFN 75
L PG A ++T++ SV M A T +PG N
Sbjct: 272 LKPGMLVTFAPAALTTEVKSVEMHHEALTEALPGDN 307
>EF013227-1|ABK54581.1| 119|Apis mellifera elongation factor
1-alpha protein.
Length = 119
Score = 233 bits (569), Expect = 1e-63
Identities = 108/119 (90%), Positives = 113/119 (94%)
Frame = +1
Query: 130 KSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLNH 309
KSVEMHHEAL EA+PGDNVGFNVKN+SVKELRRGYVAGDSKN PP+GAADFTAQVIVLNH
Sbjct: 1 KSVEMHHEALTEALPGDNVGFNVKNISVKELRRGYVAGDSKNQPPRGAADFTAQVIVLNH 60
Query: 310 PGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSK 486
PGQISNGYTPVLDCHTAHIACKFAEIKEK DRRTGK+TE NPKSIKSGDAAIV L P+K
Sbjct: 61 PGQISNGYTPVLDCHTAHIACKFAEIKEKCDRRTGKTTEENPKSIKSGDAAIVMLQPTK 119
>AY208278-1|AAO48970.1| 274|Apis mellifera elongation factor
1-alpha protein.
Length = 274
Score = 168 bits (409), Expect = 4e-44
Identities = 79/84 (94%), Positives = 81/84 (96%)
Frame = +1
Query: 4 LPLQDVYKIGGIGTVPVGRVETGVLKPGTIVVFAPANITTEVKSVEMHHEALQEAVPGDN 183
LPLQDVYKIGGIGTVPVGRVETGVLKPG +V FAPA +TTEVKSVEMHHEALQEAVPGDN
Sbjct: 191 LPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFAPAGLTTEVKSVEMHHEALQEAVPGDN 250
Query: 184 VGFNVKNVSVKELRRGYVAGDSKN 255
VGFNVKNVSVKELRRGYVAGDSKN
Sbjct: 251 VGFNVKNVSVKELRRGYVAGDSKN 274
>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
protein.
Length = 1370
Score = 23.0 bits (47), Expect = 2.6
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = +1
Query: 208 SVKELRRGYVAGDSKNNPPKGAADFTAQVIVLNHPG 315
S ++LR ++A + + PKG Q++VLN G
Sbjct: 283 STRDLREIHLAYNGLRDLPKGIFTRLEQLLVLNLAG 318
>L01588-1|AAA27735.1| 74|Apis mellifera zinc finger protein
protein.
Length = 74
Score = 21.8 bits (44), Expect = 5.9
Identities = 8/14 (57%), Positives = 8/14 (57%)
Frame = +3
Query: 327 RLHTSLGLPHCPHC 368
RLHT HC HC
Sbjct: 30 RLHTGEKPYHCSHC 43
>AY268031-1|AAP23056.1| 810|Apis mellifera dorsal protein splice
variant B protein.
Length = 810
Score = 21.8 bits (44), Expect = 5.9
Identities = 18/63 (28%), Positives = 24/63 (38%)
Frame = -2
Query: 411 STTVNFFFDFCKFAGNVGSVAIQDWCVTV*DLTRMVKHNDLSCKICSTLRWVVFGVTSNI 232
ST+ N F K G G + CVT R HN + + C V + N+
Sbjct: 77 STSENKTFPTIKIVGYKGRALVVVSCVTKDQPYRPHPHNLVGKEACKQGVCTVEVSSENM 136
Query: 231 TTT 223
T T
Sbjct: 137 TVT 139
>AY268030-1|AAP23055.1| 602|Apis mellifera dorsal protein protein.
Length = 602
Score = 21.8 bits (44), Expect = 5.9
Identities = 18/63 (28%), Positives = 24/63 (38%)
Frame = -2
Query: 411 STTVNFFFDFCKFAGNVGSVAIQDWCVTV*DLTRMVKHNDLSCKICSTLRWVVFGVTSNI 232
ST+ N F K G G + CVT R HN + + C V + N+
Sbjct: 77 STSENKTFPTIKIVGYKGRALVVVSCVTKDQPYRPHPHNLVGKEACKQGVCTVEVSSENM 136
Query: 231 TTT 223
T T
Sbjct: 137 TVT 139
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.317 0.135 0.394
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 187,892
Number of Sequences: 438
Number of extensions: 4076
Number of successful extensions: 14
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19682733
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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