Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0033
         (681 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0961 - 9622444-9622928,9623011-9623102,9623862-9624002,962...    30   1.5  
04_01_0615 - 8060085-8060972                                           29   3.4  
12_01_0054 + 463743-464414,464896-465024,465336-465440,465524-46...    29   4.5  
11_01_0054 + 416626-417297,417757-417885,418197-418301,418385-41...    29   4.5  

>08_01_0961 -
           9622444-9622928,9623011-9623102,9623862-9624002,
           9624460-9624506,9624581-9624639,9624780-9624940,
           9625021-9625196,9625284-9625355,9625820-9625879,
           9625997-9626191
          Length = 495

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 23/72 (31%), Positives = 33/72 (45%)
 Frame = +1

Query: 13  FGLRCSLQQSCCATISSTGRDSFNGVCGSLSGARVWRTWMVGTRIAGTRTAG*ALWTSRS 192
           F  +C+L    CAT SS+   S  GV GS+       T +   R+  T       WT++S
Sbjct: 340 FCTKCALY--LCATASSS--TSIRGVPGSIPCPLCRHTIVSFVRLTSTTPIKELPWTNKS 395

Query: 193 EAIATPGCSIGA 228
            A+   G S G+
Sbjct: 396 LALCAAGASTGS 407


>04_01_0615 - 8060085-8060972
          Length = 295

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 11/25 (44%), Positives = 19/25 (76%)
 Frame = +2

Query: 11  FLACVAACSSHAVLPLVAPAAIHST 85
           F A +AAC++ A+  LVAP+++H +
Sbjct: 208 FRAAIAACAARAMWLLVAPSSLHGS 232


>12_01_0054 +
           463743-464414,464896-465024,465336-465440,465524-465917,
           466325-466422,466505-466753,466920-466979
          Length = 568

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 15/28 (53%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = +3

Query: 105 RCTGMADMDGWDTDRWDTDCR-LSPLDI 185
           RCT + ++D  DTD  D  CR LS LDI
Sbjct: 416 RCTHLEELDLTDTDLDDEGCRLLSKLDI 443


>11_01_0054 +
           416626-417297,417757-417885,418197-418301,418385-418778,
           419186-419283,419366-419614,419784-419843
          Length = 568

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 15/28 (53%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = +3

Query: 105 RCTGMADMDGWDTDRWDTDCR-LSPLDI 185
           RCT + ++D  DTD  D  CR LS LDI
Sbjct: 416 RCTHLEELDLTDTDLDDEGCRLLSKLDI 443


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,828,255
Number of Sequences: 37544
Number of extensions: 216985
Number of successful extensions: 709
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 687
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 708
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1721314888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)