Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0033
         (681 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ441131-1|CAD29630.1|  567|Anopheles gambiae putative chitin bi...    24   5.1  
AB090812-1|BAC57899.1|  541|Anopheles gambiae gag-like protein p...    24   5.1  
U42429-1|AAB54088.1|  596|Anopheles gambiae engrailed protein.         23   8.9  
U42214-1|AAB58461.1|  596|Anopheles gambiae engrailed protein.         23   8.9  

>AJ441131-1|CAD29630.1|  567|Anopheles gambiae putative chitin
           binding protein protein.
          Length = 567

 Score = 23.8 bits (49), Expect = 5.1
 Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = -3

Query: 616 TVISSPKIS-TAKMSTTKMSANKMSATKIAA 527
           TV+S+P  S T+  STT  S++  S T  +A
Sbjct: 537 TVVSTPSSSTTSSSSTTSSSSSSSSKTTTSA 567


>AB090812-1|BAC57899.1|  541|Anopheles gambiae gag-like protein
           protein.
          Length = 541

 Score = 23.8 bits (49), Expect = 5.1
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = -2

Query: 533 SRHQDVRHQDARRQDVQLQNIHRQDIHHQGFQHQDVQRR 417
           S+ Q  + Q  +++  QLQ   +Q   HQG ++   Q R
Sbjct: 256 SQQQPQQQQQPQQKQQQLQRRQQQQQQHQGQRYVPPQLR 294


>U42429-1|AAB54088.1|  596|Anopheles gambiae engrailed protein.
          Length = 596

 Score = 23.0 bits (47), Expect = 8.9
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = +1

Query: 94  GSLSGARVWRTWMVGTRIAGTRTAG 168
           GS +G+ +W  W+  TR +   ++G
Sbjct: 457 GSENGSNLWPAWVYCTRYSDRPSSG 481


>U42214-1|AAB58461.1|  596|Anopheles gambiae engrailed protein.
          Length = 596

 Score = 23.0 bits (47), Expect = 8.9
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = +1

Query: 94  GSLSGARVWRTWMVGTRIAGTRTAG 168
           GS +G+ +W  W+  TR +   ++G
Sbjct: 457 GSENGSNLWPAWVYCTRYSDRPSSG 481


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 485,544
Number of Sequences: 2352
Number of extensions: 8680
Number of successful extensions: 22
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 68577420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)