Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0033
         (681 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF067219-15|AAC17023.2|  802|Caenorhabditis elegans Hypothetical...    35   0.047
AL132948-6|CAC51070.1|  395|Caenorhabditis elegans Hypothetical ...    29   2.3  
U55854-6|AAK68161.1|  197|Caenorhabditis elegans Hypothetical pr...    27   9.4  

>AF067219-15|AAC17023.2|  802|Caenorhabditis elegans Hypothetical
           protein R12E2.2 protein.
          Length = 802

 Score = 35.1 bits (77), Expect = 0.047
 Identities = 26/86 (30%), Positives = 38/86 (44%), Gaps = 6/86 (6%)
 Frame = -2

Query: 296 RPSVTDETQLLGLHGLWEPREQHAPMEQ------PGVAIASERDVQRA*PAVRVPAIRVP 135
           +P+VTD+  L    GLW  R +H+  EQ        +     +DVQ+   A  VP  +  
Sbjct: 379 KPAVTDKRDLKTEIGLWAERSRHSNFEQSRRRNLATIQRLHPKDVQKISTAPDVPTPKAE 438

Query: 134 TIHVRHTRAPDKEPQTPLNESRPVLL 57
            I  + T  P +E + P  E   V L
Sbjct: 439 NIE-KPTEKPSEEVKPPAREQPQVSL 463


>AL132948-6|CAC51070.1|  395|Caenorhabditis elegans Hypothetical
           protein Y39B6A.7 protein.
          Length = 395

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 14/38 (36%), Positives = 16/38 (42%)
 Frame = +1

Query: 88  VCGSLSGARVWRTWMVGTRIAGTRTAG*ALWTSRSEAI 201
           VC        W TW VG R+  TR     +  S SE I
Sbjct: 69  VCHLTMSKSTWLTWKVGDRVVETRDCNQVIRLSSSETI 106


>U55854-6|AAK68161.1|  197|Caenorhabditis elegans Hypothetical
           protein C04G6.7 protein.
          Length = 197

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 10/22 (45%), Positives = 10/22 (45%), Gaps = 1/22 (4%)
 Frame = +1

Query: 310 CCGCC-PYTARCETDCCACYTG 372
           CC CC P    C   CC C  G
Sbjct: 112 CCTCCRPCCCGCGCGCCGCGGG 133


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,508,248
Number of Sequences: 27780
Number of extensions: 173631
Number of successful extensions: 667
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 586
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 659
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1550199966
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)