Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0033
         (681 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          22   4.7  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    22   6.2  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    22   6.2  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    22   6.2  

>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -2

Query: 674 IIQKHYSSGVLNRDVTMHNDRDFQPQDI 591
           II  +YS   LN D  + N  ++  +DI
Sbjct: 200 IIPANYSGWYLNHDYNLENKLNYFIEDI 227


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = -3

Query: 382 KRSSLYNRRNNRFHNGQYRGSNHSRRR 302
           + SS  + +NN  HN Q   S+ S  R
Sbjct: 433 RHSSKSDNQNNNQHNDQAHHSSKSNNR 459


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = -3

Query: 310 RRRMDVQA*LMRHSYWGYMGYGSHV 236
           +R + ++  ++ HSY G  G+GS V
Sbjct: 651 KRIVKLRGSIIDHSYGGGFGFGSAV 675


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = -3

Query: 310 RRRMDVQA*LMRHSYWGYMGYGSHV 236
           +R + ++  ++ HSY G  G+GS V
Sbjct: 689 KRIVKLRGSIIDHSYGGGFGFGSAV 713


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 128,685
Number of Sequences: 438
Number of extensions: 2167
Number of successful extensions: 16
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20708550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)