Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0033
         (681 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g39340.1 68415.m04829 SAC3/GANP family protein contains Pfam ...    29   3.8  
At5g45560.1 68418.m05595 pleckstrin homology (PH) domain-contain...    28   5.0  
At4g19040.1 68417.m02805 pleckstrin homology (PH) domain-contain...    28   5.0  
At4g23050.2 68417.m03324 protein kinase, putative similar to MAP...    27   8.7  
At4g23050.1 68417.m03323 protein kinase, putative similar to MAP...    27   8.7  
At3g10450.1 68416.m01253 serine carboxypeptidase S10 family prot...    27   8.7  

>At2g39340.1 68415.m04829 SAC3/GANP family protein contains Pfam
           profile: PF03399 SAC3/GANP family
          Length = 1006

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 18/64 (28%), Positives = 28/64 (43%), Gaps = 2/64 (3%)
 Frame = -2

Query: 248 WEPR--EQHAPMEQPGVAIASERDVQRA*PAVRVPAIRVPTIHVRHTRAPDKEPQTPLNE 75
           W P     H P +QPG A+++  D      A        P++   H   P    Q+PL E
Sbjct: 306 WRPETDSSHPPSQQPGAAVSTSNDTYWMHQA--------PSLQAHHPVPPQNNYQSPL-E 356

Query: 74  SRPV 63
           ++P+
Sbjct: 357 TKPL 360


>At5g45560.1 68418.m05595 pleckstrin homology (PH) domain-containing
           protein / lipid-binding START domain-containing protein
           weak similarity to SP|P79245 Steroidogenic acute
           regulatory protein, mitochondrial precursor (StAR) {Ovis
           aries}; contains Pfam profiles PF01852: START domain,
           PF00169: PH domain
          Length = 719

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 14/50 (28%), Positives = 23/50 (46%)
 Frame = +3

Query: 138 DTDRWDTDCRLSPLDITF*SDRHTWLLHWRMLLTWLXXXXXXQ*LCLISH 287
           D  R++ DC      +    D HT +L+ R+LL W       + LC + +
Sbjct: 250 DGTRYEWDCSFHNGRLVEEVDGHTAILYHRLLLDWFPMVVWPRDLCYVRY 299


>At4g19040.1 68417.m02805 pleckstrin homology (PH) domain-containing
           protein / lipid-binding START domain-containing protein
           contains Pfam profiles PF01852: START domain, PF00169:
           PH domain
          Length = 718

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 14/50 (28%), Positives = 23/50 (46%)
 Frame = +3

Query: 138 DTDRWDTDCRLSPLDITF*SDRHTWLLHWRMLLTWLXXXXXXQ*LCLISH 287
           D  R++ DC      +    D HT +L+ R+LL W       + LC + +
Sbjct: 250 DGTRYEWDCSFQFGSLVEEVDGHTAVLYHRLLLDWFPMIVWPRDLCYVRY 299


>At4g23050.2 68417.m03324 protein kinase, putative similar to MAP3K
           delta-1 protein kinase [Arabidopsis thaliana]
           gi|2253010|emb|CAA74591; contains Pfam PF00069 Protein
           kinase domain and PF00989 PAS domain
          Length = 736

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +3

Query: 69  PRFIQRRLWLLIRCTGMADMDGWDTDRWDTDCRLSPLDI 185
           PR ++  L   +R T M+D++G   D W+T   + PL I
Sbjct: 398 PRGLESGLVSGMRGTKMSDLNGEIEDAWNTRLSVDPLPI 436


>At4g23050.1 68417.m03323 protein kinase, putative similar to MAP3K
           delta-1 protein kinase [Arabidopsis thaliana]
           gi|2253010|emb|CAA74591; contains Pfam PF00069 Protein
           kinase domain and PF00989 PAS domain
          Length = 735

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +3

Query: 69  PRFIQRRLWLLIRCTGMADMDGWDTDRWDTDCRLSPLDI 185
           PR ++  L   +R T M+D++G   D W+T   + PL I
Sbjct: 397 PRGLESGLVSGMRGTKMSDLNGEIEDAWNTRLSVDPLPI 435


>At3g10450.1 68416.m01253 serine carboxypeptidase S10 family protein
           similar to glucose acyltransferase GB:AAD01263 [Solanum
           berthaultii]; also similar to serine carboxypeptidase I
           GB:P37890 [Oryza sativa]
          Length = 437

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 11/16 (68%), Positives = 13/16 (81%), Gaps = 1/16 (6%)
 Frame = +1

Query: 118 WRTWMVGTRIAG-TRT 162
           WR WM+G +IAG TRT
Sbjct: 385 WRPWMIGDQIAGYTRT 400


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,998,862
Number of Sequences: 28952
Number of extensions: 160607
Number of successful extensions: 489
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 467
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 488
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1438152744
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)