Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0031
         (698 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ...    27   2.6  
SPAP27G11.04c |||tRNA specific adenosine deaminase subunit Tad3 ...    27   3.4  
SPBC1683.12 |||nicotinic acid plasma membrane transporter |Schiz...    26   4.5  
SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|c...    26   6.0  

>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 2493

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -3

Query: 147  SSIPLQSRITRALKGDFFSSLNLF 76
            SS+P + R T  L  DFF +L L+
Sbjct: 1594 SSLPSEERFTEVLTNDFFPTLMLY 1617


>SPAP27G11.04c |||tRNA specific adenosine deaminase subunit Tad3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 315

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +1

Query: 205 LNVCIMMIINRTDIRNLDRRPNRT 276
           +N C+M  IN    R L RR NRT
Sbjct: 209 INHCVMNAINLVAKRELSRRQNRT 232


>SPBC1683.12 |||nicotinic acid plasma membrane transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 482

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = -3

Query: 210 IQTKSINKICRKLHWYFFNIYSSIPLQSRITRALKGD 100
           I+ K   K+ RKL WY   ++S +   S + RA  G+
Sbjct: 28  IEKKEEAKLVRKLDWYLMPMFSVLYFLSFLDRANIGN 64


>SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 796

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 13/55 (23%), Positives = 30/55 (54%)
 Frame = -3

Query: 360 LSLNEIKRVSILIYPLIFFSTGNVKFFARPVRSPVEVSYVCAIDNHHNTYIQTKS 196
           +SL +   +S +I+PL+ F+  +   F+  +RS ++   +  I  H +  + ++S
Sbjct: 711 MSLRKAYWLSTVIFPLLCFTVISAYNFSTMIRSSMQFVSLYYIRTHQSNTLSSES 765


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,522,169
Number of Sequences: 5004
Number of extensions: 48464
Number of successful extensions: 125
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)